Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00508 ATGGCATCCAATATGGAAGACATGAACATGGTTGAGGGAATTACACTTCCAGGGTTCAGATTTCACCCTACAGAAGAAGAGCTTCTTGATTTCTATCTGAAAAACATGGTTGTTGGCAAGAAACTTCGTTTTGATGTCATTGGTTTCCTCAACATCTATCACCATGATCCTTGGGACTTGCCTGGTCTTGCAAAGGTTGGGGAAAGAGAATGGTACTTCTTTGTGCCAAGGGACAAAAAGCATGGAAGTGGGGGAAGGCCTAACCGCACCACTGAAAAGGGGTTCTGGAAAGCCACAGGTTCAGACAGGAAAATTGTGACCTTATCAGATCCTAAGCGCATCATAGGGTTGAGAAAGACTCTGGTTTTCTATGAGGGAAGAGCTCCAAAGGGATCCAAGACTGATTGGGTCATGAATGAGTACCGTTTACCTGACAATTGTAGATTACCTAAGGACATTGTGTTATGCAAGATATACAGAAAGGCAACTTCTTTGAAGGTGCTGGAGCAAAGGGCAGCTGAAGAGGAAGAGATGAAGCAATTGGTTGGTTCCCCTGCATCTCCTCCTTCCTCCACAGACATGTCCATGTCCATGTCAATGTCAATGTCAATGTCCTTTAACAGCCCACAGGAAGAGCAAAATGTGCCTCTGACCTTGTTGCAACATGTGGTTCCTAAGAAAGAATCTGAAATTGAAACTGAAGTAATGGTGTCTATGCCAGTGCAAGTGCCAGTAGTTCCAAAGCTAGAAAGAACAAAGAGCCAATTACTTGTGAAAGACAACAAAACTTGTGGGATATCCCTGCAATTGCCCCCTGGGAAGGACAAGTTACCAGAGCTTCAGCTGCCATTGATCACAGATTGGACCCAACTGACCCAAGACACCTTTTGGGCTCAGTTGAACAGTCCATGGCTTCAAAACTGGACTCCTTCCAACATCTTAAACTTTTAG 951 0.4448 MASNMEDMNMVEGITLPGFRFHPTEEELLDFYLKNMVVGKKLRFDVIGFLNIYHHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPKGSKTDWVMNEYRLPDNCRLPKDIVLCKIYRKATSLKVLEQRAAEEEEMKQLVGSPASPPSSTDMSMSMSMSMSMSFNSPQEEQNVPLTLLQHVVPKKESEIETEVMVSMPVQVPVVPKLERTKSQLLVKDNKTCGISLQLPPGKDKLPELQLPLITDWTQLTQDTFWAQLNSPWLQNWTPSNILNF. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00508 316 Gene3D NAC domain 24 165 IPR036093 GO:0003677|GO:0006355
Seca6g00508 316 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Seca6g00508 316 ProSiteProfiles NAC domain profile. 15 161 IPR003441 GO:0003677|GO:0006355
Seca6g00508 316 SUPERFAMILY NAC domain 7 161 IPR036093 GO:0003677|GO:0006355
Seca6g00508 316 FunFam NAC domain-containing protein 67-like 24 165 - -
Seca6g00508 316 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00508 Seca-Chr6 15116088 15117789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00508 10 310 NAC Transcription Factor Family AT2G17040 57.468 1.26e-111 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca6g00508 NAM 2.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00508 - - gmx:732555 470.314