Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00489 ATGGAGTTCGTTGGCAAAAGCGTTAAGAAAGAGGTGAAAGGAGCTGGGATTGTTTCGGGAACTGTGAAATCCTACGATCCTTCCTCGGGTTTTTTCGAGATCCTCTACGAAGATGGTGATTCCGAGGAGTTGGAATCCTCTGACGTGGCTTCGCTTTTGGAATTTCAACCGGAGCTTGCCAAGGCCAAGCCTCGGGTCGGCCGGAAACCCAAGAAGCGCCGTCGGGTCGAGCGGAAGCGCGAAACGACGACGGTTTCAGGTAATGCTAGTGAGAATTTGGTTGCGGAGGGTAGTGAATTTAGGGGGGTTTTGGATGGTGATGCTTCTGGTGGTGAATTAGGTAGTGGATTTGAGAGGGACTTGGGTGTGGGAAATGGGAATGGAGGGAATCTTATAGGCAATGTGAATGGAAGTGTGAGTGAAGAAACCATGCGAAATGAAATTGGGTTTGAAGATAATTTGAATAAGAGTGTCTCTGCTAATGGGAATTGTGTTAAAGATGGGCTTGATTTGAATGCTGGGCTTAATCTGAACGAGGATATTAATTTGAATGATGTGTGTGGTTCGCCTTTTGACATTGGGGGTAGTTTGAAGAGAAGAGACTGCATTGACTTGAATTTGGATGTGAGTAATGAGGACGATGTCAATGCGGGAGGGGAAACATTGCAGCGGGAATGTAAGTTTGACTTGAATGTGGAGGTATGTGAAGAAGTGAAGGAAGCTCAGGGTGATGGTGACGGAAATGGATATTCTGAGGTAGATGCTTTGATGGGTAAGACGGGGCAACTCCAAGAGGAAGAGACAAATATTAATCATAGATCTATAGAAGATGATGATGTTCATGGTAATTTGAATCATGTCTCTGATGCTGTCAAACTGGAGGAAGTTCAGGTTTCCGTCGAACATGCAGCTAAAGATGCTTCTTTGTGTTCGATTGAGGGAAAGGAAGGCAATGATGGCAAAAAAACTGCAGCAGCTATTGATTCTCTAAAGATTTCTAATGCTATTGTTAGGGATTGTGATTCTGTTTCTTTGGAGGACAAGCAAACAGATTGTCCTTCTGAAGCTGATTTTGCCACAGTTCATGAATACCAAGATGATCCAGGAAGTCCAATCAAACAAGGAAGTGGCCGGAGGAAAAGAAGAAAAGTATCGGATAATCTAAAAGCCACCCCAGAGACGGTTTTAAGGAGGAGTTCTCGACGTGCATCAGCTAAAAAACAGGTTTTAAGCACCATATCAGTGCAGGTGACTGATGATCCTTTGTTGTCCTTGGGAACCGGTGCCTTAACAGAAGAAAAACCTTTAATGCCTGGTTCTGAGAAATCTGAACAATGCAATGTTACTCTTCCAAAGCTGCAATTACCCCCTTCTTCTCAAAGTTTGAATTTAGATGATGTTCCTGTTCTTGAACTTTTTTCTGTTTATGCCTGTTTAAGATCATTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCAATAAAGTCTGAAAGCCCAACTATGTTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTTAGAAAGCATTTGGAACACCTTTCCAATGAGGGTAGCCAATCTGCATCCAATTGCCTGAGGAATGTTAACTGGGATTTCTTGGACCTGGTCACATGGCCCATTTTCATGGCCGAGTACCTTCTGATTCATGCTTCAGGGTTTAAAACTGGATTTGATCTTAATCACTTAATGTTTAGAACTGACTACTACAAACAACCTGTAGTTTTGAAGGTTGAGATTCTTCAGTACCTGTGTGATGATATGATTGAAGCAGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACTGAGACTGGTATGGGATTTGATCAGAATGTTTATTTTGACACTTGCAAAAAAAGAAGAGCTGTAGTGGATGTTTCTGGTGGCTCTTGCTTGACTGAAGAGATTGTAGATGACCCAACTGACTGGAACAGTGATGAATGCTGCCTTTGCAAAATGGATGGGAATTTAATATGCTGTGACGGTTGCCCTGCTGCATTCCACTCAAGGTGTGTGGGCATTGCAAGTGACAATCTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGCAATTGGCACACACAAGGCTTGGATGAAATCACAAAGGTCACTCCGAGGAGGAGACTTGTTAGGGATTGATCTTCATGGCCGTCTTTATTTTAACAGCTGTGGTTACTTGTTAGTGTCAAACTCATCTGATCCAGGATCCTCATTCAATTACTACCACAGAAATGATCAACATGTTGTCATTGAAGTTCTAAAGTCTATGGATTCTTCATATGGAGCCATATTAATGGCTATCTACAAGCATTGGGATATCCCTACTGAAGTAAGTGTGGGGGCCAGTAACTTGGTAGTCTTAAATCAAAGTTCCTGCAGGGACAAGCAGACGACAGGTGAATATTCTGCTGTGCATACATCTTTAGCACCTTTTACTTCCGAAACTTGTATGGATAAGAATCAGGCTGATGATCAAAGAAAGATGGATGAAAATTCAACAATTCACTGTTATACTAATCATGGCCAAGAATTTCCAAAAGCCGCGAACCGCTTAGACTCAATGACAACTATAGAAAGTGCTTGTATTGCTTCAGAAGGATCAGCCAATACCACACAAATGAAATCAGGCATTGAGAATGTTCAAATGCATGGGCTTTATGATTCCAATAGATCTGATGAATCCTTGAATCTGTCAGGAGTACCAGAAAAAAACTGTCCCGTTGGTGGCTGTTCTTTGACATCTTCCAGCTTAGATGTGGGACATAAAATAAGCTTAAGATCTGTAGGTGCTAGCAGTACCCCCTGCGTGGACAATAAGGATACGTCAGAAGCAACTTGTGGGGTTAACTACATAAACTACTACAGCTTTGCCCGGGTGGCCTCATTAATTGCACAAGAGTTGATGTGTAAGTTACCTGAAAAGATCAACAAGAATATTGCAATGTCTGAAGAAGAAATAATTTCAGACCAAGCAAAAGCCATTATGAAGAAATCCACCAACTTTTGTTGGCCAAGTATTCAAAACCAGAATGCAGCTGTACAAAAGGAAAAATGTGGGTGGTGCTTTGCTTGCAAAGTTGCAAATGATGACAGAGAATGCGTGTTCAATTCTGTGGTGAAGCCTGTTCGGGAAGTGTCTAAAAGTAGTTCAGCAGGGCTTCAACCCAGGAAGATCCAGCATGGACATCTTAGAGAGATCATATGTCTTATTTTCTCCCTTGAGGTTCGATTACGTGGGCTACTGTTGGGTCCATGGTTGAATCTGCATCAGACTAATCTTTGGCATAAGGATCTTTTGAAGACATCTGATTTTCTTCCTGTTAAACGATTATTGCTTCTTTTGGAATCCAATTTGAGGCCTCTTGCACTTTCAGCAGATTGGTTAAAGCCTGTGGATTCTGTTGTTACTATGGGATCAGCTACTCATATTGTGGTCAGTTCATCACGCACATATTCAAGGCATGGTATTGGAAGGAAAAGGGCTAGGTATTCAGATATTGAATCCAATTCATCTTCAAACACTAATGGTGGTTTGGGAATGTTTTGGTGGAGGGGTGGTAGGGTTTCTCGAAAATTGTTTAATTGGAAGGCTTTACCTCGCTCCTTGGTTACCAAGGCTGCTAGACAAGCTGGGTGTACAAAGATACCAGGCATTTTATATCCTGAGAATTCAGATTTTGCAAGGAGAAGCAGATATGTTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGTGTTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTCATTCATACATAAGATGGCATGATATTGAGAATAGCCATCCCCTGTATGTGTTGGACAAGGAATCTAGAAAATCAGTTAGGCTGTTCAAAAAAGCAATTGTGCGCAGGAAGAGCACTGATGGTCAATCTGTGAAATATCTTCTTGATTTTGGAAAGAGAAGGGCTGTTCCAGATATTGTTATTAGACATGGTTCTTTGTTGGAACAATCCTCAAGCGACAGGAAAAAATATTGGCTGGATGAGCCTTATGTTCCCTTACATCTTTTAAAGAATTTTGAGGAAAAAAGGATTGTCCGCAAGGCCAATGATAAGAAGCTCGGAAAAATTCTTGAGATTGGTAGAGTAAAGAGGTTTCCTCCTCAACAAAGGGGATTTTCATATTTGTTTTCTAGAATGGAAAGATTTGATTGTCATCAGTGTGGGCATTGCAACAGAGATGTTCCAATCAGGGAAGCTGTGAGTTGCGTTCATTGCAAAGGATATTTCCACAAGAGGCATGTCAGGAAATCTGGTGGCACAAGGACTACTGAATGCACATATTCATGTCACAAATGCCAGGATGGGTTGCGTGTAAAGACTAATACTAATAGAAGGAAAGTTGACTCAAAACTGCAGAAGATTAAATCGCAGAAATGTAAAAATGTCTCTTTAGTGTGTAAATCAGTGAACCTTAAAGGCAGTAAAAAGGCATCAAGTAAGGTGCGGCAGGTGGCATCTCGTACCAATAAGAAGATCCAAGTGATTGTACCTCTTCGTCGTTCTACTAGGAAGGCAAAATCCCTGTATATGCAAAGTCAAATGATTGGAGGACGTAAAAAAGGAACGCAAAGTAAAAAGAGTGTAGGACGTAAAAAAGGAAAGCAAAATAAATCCAAGAAGGTAACCTCTCAGAAGCCGAAGGAAACTACTATTCAACGGAAGAAGTTGGCAGTAACTGCTGCATGTAAACAAAGAACGAAAATCTGTAACAGTTACTGGCTTAATGGTCTTCGGTTGTCTAGAAAGCCAAATGATGAACGTGTAATGCTGTTTAAAGAGAAAAAACATGTTGTCTCCTCCAAAGATTTTTCTGGCTCCCTTGATCTGCCTAAATGCTGCCTTTGTTGTGGAGATGGATGCACTTTAAATTATATTGCTTGTGAAATATGTGGAGACTGGTTTCATGGGGATGCTTTTGGACTCAATGTAGAAAAGGCCAAACAACTTATTGGATTTAAGTGCCATGTATGTCGTGATAGGCCTGCTCCAATCTGCCCCCATATCAAGAGTAACGCATTATCTCACACTGAAAGCAATGCTGCAATTGAGTGCGCAGAGGAATTATCTAATCCTGTTTCTCTTCAACCTTTGAGTGAGATCCCTTGCAATTAA 5184 0.4144 MEFVGKSVKKEVKGAGIVSGTVKSYDPSSGFFEILYEDGDSEELESSDVASLLEFQPELAKAKPRVGRKPKKRRRVERKRETTTVSGNASENLVAEGSEFRGVLDGDASGGELGSGFERDLGVGNGNGGNLIGNVNGSVSEETMRNEIGFEDNLNKSVSANGNCVKDGLDLNAGLNLNEDINLNDVCGSPFDIGGSLKRRDCIDLNLDVSNEDDVNAGGETLQRECKFDLNVEVCEEVKEAQGDGDGNGYSEVDALMGKTGQLQEEETNINHRSIEDDDVHGNLNHVSDAVKLEEVQVSVEHAAKDASLCSIEGKEGNDGKKTAAAIDSLKISNAIVRDCDSVSLEDKQTDCPSEADFATVHEYQDDPGSPIKQGSGRRKRRKVSDNLKATPETVLRRSSRRASAKKQVLSTISVQVTDDPLLSLGTGALTEEKPLMPGSEKSEQCNVTLPKLQLPPSSQSLNLDDVPVLELFSVYACLRSFSTLLFLSPFELEDLVAAIKSESPTMLFDSIHVSILQTLRKHLEHLSNEGSQSASNCLRNVNWDFLDLVTWPIFMAEYLLIHASGFKTGFDLNHLMFRTDYYKQPVVLKVEILQYLCDDMIEAEAIRSELNRRSLVTETGMGFDQNVYFDTCKKRRAVVDVSGGSCLTEEIVDDPTDWNSDECCLCKMDGNLICCDGCPAAFHSRCVGIASDNLPEGDWYCPECAIGTHKAWMKSQRSLRGGDLLGIDLHGRLYFNSCGYLLVSNSSDPGSSFNYYHRNDQHVVIEVLKSMDSSYGAILMAIYKHWDIPTEVSVGASNLVVLNQSSCRDKQTTGEYSAVHTSLAPFTSETCMDKNQADDQRKMDENSTIHCYTNHGQEFPKAANRLDSMTTIESACIASEGSANTTQMKSGIENVQMHGLYDSNRSDESLNLSGVPEKNCPVGGCSLTSSSLDVGHKISLRSVGASSTPCVDNKDTSEATCGVNYINYYSFARVASLIAQELMCKLPEKINKNIAMSEEEIISDQAKAIMKKSTNFCWPSIQNQNAAVQKEKCGWCFACKVANDDRECVFNSVVKPVREVSKSSSAGLQPRKIQHGHLREIICLIFSLEVRLRGLLLGPWLNLHQTNLWHKDLLKTSDFLPVKRLLLLLESNLRPLALSADWLKPVDSVVTMGSATHIVVSSSRTYSRHGIGRKRARYSDIESNSSSNTNGGLGMFWWRGGRVSRKLFNWKALPRSLVTKAARQAGCTKIPGILYPENSDFARRSRYVAWRAAVEMSTSVEQLALQVRELHSYIRWHDIENSHPLYVLDKESRKSVRLFKKAIVRRKSTDGQSVKYLLDFGKRRAVPDIVIRHGSLLEQSSSDRKKYWLDEPYVPLHLLKNFEEKRIVRKANDKKLGKILEIGRVKRFPPQQRGFSYLFSRMERFDCHQCGHCNRDVPIREAVSCVHCKGYFHKRHVRKSGGTRTTECTYSCHKCQDGLRVKTNTNRRKVDSKLQKIKSQKCKNVSLVCKSVNLKGSKKASSKVRQVASRTNKKIQVIVPLRRSTRKAKSLYMQSQMIGGRKKGTQSKKSVGRKKGKQNKSKKVTSQKPKETTIQRKKLAVTAACKQRTKICNSYWLNGLRLSRKPNDERVMLFKEKKHVVSSKDFSGSLDLPKCCLCCGDGCTLNYIACEICGDWFHGDAFGLNVEKAKQLIGFKCHVCRDRPAPICPHIKSNALSHTESNAAIECAEELSNPVSLQPLSEIPCN. 1728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00489 1727 MobiDBLite consensus disorder prediction 1527 1574 - -
Seca6g00489 1727 SUPERFAMILY FYVE/PHD zinc finger 1634 1688 IPR011011 -
Seca6g00489 1727 SMART testlast3 466 526 IPR018501 -
Seca6g00489 1727 ProSiteProfiles DDT domain profile. 466 526 IPR018501 -
Seca6g00489 1727 SMART PHD_3 663 706 IPR001965 -
Seca6g00489 1727 SMART PHD_3 1636 1682 IPR001965 -
Seca6g00489 1727 MobiDBLite consensus disorder prediction 1547 1564 - -
Seca6g00489 1727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1630 1688 IPR013083 -
Seca6g00489 1727 PANTHER PHD FINGER FAMILY PROTEIN 2 1687 - -
Seca6g00489 1727 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 579 612 IPR028942 -
Seca6g00489 1727 MobiDBLite consensus disorder prediction 358 402 - -
Seca6g00489 1727 SUPERFAMILY FYVE/PHD zinc finger 652 714 IPR011011 -
Seca6g00489 1727 Pfam DDT domain 470 522 IPR018501 -
Seca6g00489 1727 ProSiteProfiles Zinc finger PHD-type profile. 661 708 IPR019787 -
Seca6g00489 1727 CDD PHD1_AIRE 663 705 - -
Seca6g00489 1727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 656 722 IPR013083 -
Seca6g00489 1727 Pfam PHD-finger 664 706 IPR019787 -
Seca6g00489 1727 ProSitePatterns Zinc finger PHD-type signature. 664 705 IPR019786 -
Seca6g00489 1727 MobiDBLite consensus disorder prediction 62 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00489 Seca-Chr6 14476751 14499725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00489 1 1694 PHD Transcription Factor Family AT5G12400 41.122 0.0 1124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca6g00489 DDT 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00489 - - gmx:100800973 2539.61