Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00457 ATGATTAAAGACACTGGTGAGAGATTGAAGGATTTTGCACAAAGCTTGAACTTACCCTTCTCCTTCAATATAGTTATGGTATCAGACATGCTACATCTCAGAGAAGATCTTTTTGAAATAGATCCTGAGGAAACAGTTACAGTTTACTCTCAGTTTGCACTTAGAAGCAAGATTCAACAATCAGACCAGCTTGAATCTCTCATGAGAGTGATTAGAACCATTAGTCTTGTAGTAATGGTGGTAGCTGAACCTGAGGCTAACCACAATTCTACATATTTTGTGAACCATTTTATTGAAGCTCTTTTCTACTTCAGTGCATTCTTTGATTGTCTTGAGGCTTTTATGGAGTGGGATGAGCATAACCGAATGGATATAGAATCATTGTTTGTTCTTGGAATCAGGAATATGATGGGTGCAGAGAAAGCAAAAAGAAAGAGTAGAAGTGTAAATGTCGATGTTGAGGGCATTTTTCTCGCACTTTGGAATGGTGGAGACAGAATTGAGCACGATATCTTTATTCCAAGCGGATCTTGTGGCTAA 540 0.3815 MIKDTGERLKDFAQSLNLPFSFNIVMVSDMLHLREDLFEIDPEETVTVYSQFALRSKIQQSDQLESLMRVIRTISLVVMVVAEPEANHNSTYFVNHFIEALFYFSAFFDCLEAFMEWDEHNRMDIESLFVLGIRNMMGAEKAKRKSRSVNVDVEGIFLALWNGGDRIEHDIFIPSGSCG. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00457 179 Pfam GRAS domain family 2 148 IPR005202 -
Seca6g00457 179 ProSiteProfiles GRAS family profile. 1 179 IPR005202 -
Seca6g00457 179 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 147 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00457 Seca-Chr6 13593629 13594168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00457 2 147 GRAS Transcription Factor Family AT3G03450 32.653 3.53e-19 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca6g00457 GRAS 4e-31 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00457 - - gmx:100798926 215.698