Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00454 ATGATCCCTATAGGGCGTGGCCAGCGAGAATTAATTATTGGGGACAGACAAACAGGTAAAACCGCAGTAGCCACAGATACGATTCTCAATCAACAAGGACAAAATGTAATATGTGTTTATGTAGCTGTTGGTCAAAAAGCATCTTCTGTAGCTCAAGTGGTGACTACGTTACAAGAAAGAGGAGCAATGGAATACACTATTATAGTAGCTGAAACAGCGGATTCTCCAGCTACATTAGAATACCTCGCTCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGCCACACTTTAATCATTTATGACGATCTCTCTAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCGCCGGGTCGCGAAGCTTATCCGGGAGATGTTTTATATTTGCATTCGCGTCTTTTGGAAAGAGTCGCCAAATCAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACTCAATCAAGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACTGATGGCCAAATATTTTTATCCGTCGATCTATTCAATGCTGGAATCAGACATGCGATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAAGTAGCTGGTAAGTTAAAATTAGAATTGGCACGATTTGCAGAGTTAGAAGCTTTTGCACAATTCGCTTCTGATCTTGATAAAGCTACTCAAAATCAATTGTCAAGAGGTCAACGATTGCGCGAGTTGCTAAAACAATCCCAATCAGCCCCTCTCACTGTAGAAGAACAGATAATAACTATTTATACCGGAACGAATGGTTAG 867 0.4048 MIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAVGQKASSVAQVVTTLQERGAMEYTIIVAETADSPATLEYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVLYLHSRLLERVAKSSSQLGEGSMTALPIVETQSRDVSAYIPTNVISITDGQIFLSVDLFNAGIRHAINVGISVSRVGSAAQIKAMKQVAGKLKLELARFAELEAFAQFASDLDKATQNQLSRGQRLRELLKQSQSAPLTVEEQIITIYTGTNG. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00454 288 Gene3D - 1 216 IPR027417 -
Seca6g00454 288 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 288 IPR005294 GO:0015986|GO:0045261|GO:0046933
Seca6g00454 288 Gene3D - 217 288 IPR038376 -
Seca6g00454 288 CDD F1-ATPase_alpha_CD 1 212 IPR033732 GO:0032559
Seca6g00454 288 FunFam ATP synthase subunit alpha, mitochondrial 1 216 - -
Seca6g00454 288 Pfam ATP synthase alpha/beta chain, C terminal domain 216 288 IPR000793 GO:0015986
Seca6g00454 288 CDD ATP-synt_F1_alpha_C 220 288 IPR000793 GO:0015986
Seca6g00454 288 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 1 209 IPR000194 GO:0005524
Seca6g00454 288 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 217 288 - -
Seca6g00454 288 NCBIfam F0F1 ATP synthase subunit alpha 1 287 IPR005294 GO:0015986|GO:0045261|GO:0046933
Seca6g00454 288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 215 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00454 Seca-Chr6 13586699 13587565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00454 16 215 Primary Pumps ATPases(2) AT4G38510 29.902 2.87e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00454 K02111 - rcu:11542288 518.464