Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00450 GATCCTCCTAGGGAGGAGGTATACCAAGCATTTGAAGACTGCAGAGCAGCTGGAATTCGTGTTATAGTTATAACTGGAGACAATAAGAACACTGCTGAAGCTATATGCCGTGAAATAGGTGTATTTGAACCCAATGAAGACATTAGTACAAGAAGTGTAACTGGTAGAGATTTTATGCATAAGCAAGATATTGTGAAGCTGCTCAAAGAGGAAGGGGAGGTGGTGGCCATGACTGGGGATGGCGTTAATGATGTGCCTGCCTTGAAGCTTGCAGACATTGGTGTGGCAATGAGCATTGCAGGGACAGAGAGGCAGGCACCAAGTCCAGCGTCTGTTACTACTGTGCCACAACCACTTGGGATTCGTCCTCGAGTGCGAGCAAGAAGAGGGCAAGCCACAGACCCCCACAGTATTGCTGAGCGATTACGTCGTGAGAGAATCGCTGAAAGAATGAAGGCATTGCGGGAATTAGTTCACAACATCAATAAGGTTAGTGCTTTTATGATATTAACAGATTAG 519 0.4605 DPPREEVYQAFEDCRAAGIRVIVITGDNKNTAEAICREIGVFEPNEDISTRSVTGRDFMHKQDIVKLLKEEGEVVAMTGDGVNDVPALKLADIGVAMSIAGTERQAPSPASVTTVPQPLGIRPRVRARRGQATDPHSIAERLRRERIAERMKALRELVHNINKVSAFMILTD. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00450 172 NCBIfam HAD-IC family P-type ATPase 1 98 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g00450 172 PRINTS P-type cation-transporting ATPase superfamily signature 17 27 - -
Seca6g00450 172 PRINTS P-type cation-transporting ATPase superfamily signature 78 97 - -
Seca6g00450 172 SUPERFAMILY HAD-like 1 102 IPR036412 -
Seca6g00450 172 Gene3D - 60 103 IPR023214 -
Seca6g00450 172 Gene3D - 3 59 IPR023214 -
Seca6g00450 172 Gene3D - 124 172 IPR036638 GO:0046983
Seca6g00450 172 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 172 IPR011598 GO:0046983
Seca6g00450 172 Pfam haloacid dehalogenase-like hydrolase 1 92 - -
Seca6g00450 172 PANTHER CALCIUM-TRANSPORTING ATPASE 1 103 - -
Seca6g00450 172 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 171 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00450 Seca-Chr6 13537637 13538616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00450 1 103 Primary Pumps ATPases(2) AT1G07670 66.667 5.04e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00450 K01537 - gmx:100788807 174.096