Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00446 ATGGAGATCATAGAGCAAGACAGCACTGCCAATGTCATCACCACAGAGGACTATGAAATGAGAATGAAGAGAGGGAAGCATCTTGTGTGGGAAGATTTGACTGTTGTAATTCCAAATTTTGGCAATGGACACACAAAGAGATTGCTTAATGGGTTGAGTGGTTATGCTCAACCTAACAGAATCATGGCTATCATGGGTCCTTCTGGCTCTGGAAAATCCACTCTTCTTGATGCTTTGGCAGGTAGGCTCTCTCGAAATGTTATCATGTCTGGAAATGTGCTTTTAAATGGAAAGAAAAGGAGATTAGACTATGGAGTTGTAGCTTATGTGACCCAAGAAGACATATTGTTGGGAACACTAACAGTGAGAGAGACAATATCTTACTCAGCGAATCTAAGGCTTCCAGTTACCATGACAAAAGAAGAAATTAATGACATTGTAGAGGGAACAATTATGGAGATGGGTCTTCAAGATTGTGCTGATCGGCTAATAGGGAACTGGCACTTAAGAGGCATAAGTGGTGGAGAAAAGAAAAGACTAAGCATAGCACTTGAAATCCTCACAAGGCCTTGCCTATTGTTCCTTGATGAACCCACAAGTGGTCTAGATAGTGCCTCAGCATATTTTGTTGCCCAAACTTTGAGAAACATAGCTCATGATGGAAAGACTGTTATCTCTTCTATACATCAACCAAGTAGTGAGGTTTTTGCACTCTTTGATGATCTCTTTCTGCTTTCTGGGGGTCAAACAATATATTTTGGAGCAGCTGAAAAGGCAGTTGAGTTCTTTGCCAAAGCAGGATTCCCATGTCCAAGTAGAAGAAATCCTTCTGATCATTTCCTCCGTTGCATTAATTCAGACTTCGACACTGTTACCACCACTATGATGGCCTCTCGGAGAATACATGAACAAAAATCATTAACACCATCGTTAGTGAACATATCAACTGCAGCAATCAAAGCAATACTCATAGAGAAATACCGATGGTCAGAATATGCAACTACTGCAAGAGCAAGAATCAAAGAAATCTCAAACATTGAAGTAGATGATTCTGATGAAAGTAAAAGCACGAGCCAAGCCAAATGGTGGAAGCAACTATCAACACTAACCCATAGATCATTCGTGAACATGTCTAGAGATGTGGGGTACTACTGGATAAGGATAATAATCTATGTGGCCTTATCTTTGTGTGTGGGAACAATCTTTTATGAAGTTGGATCAAGTTATAGAGCAATCTTTGCAAGAGGAGCATGTGGCGCTTTTATATCAGGTTTCATGACATTCATGTCCATAGGAGGCTTCCCATCCTTCATAGAAGAAATGAAGGTCTTTTACAAAGAAAGGCTCAATGGGTATTATGGAATTGCAGTCTACATTCTATCAAATTTTCTCTCTTCCTTTCCCTTTGTGGCATTGATGTCCATTGCTACTGGGACTATAACCTATTATATGGTTAAGTTTGGTCCAGAGTTTTCACATTTCTTGTATATCTGCTTGGATCTTATCACCTGCATTGCGGCTGTGGAGAGTTCCATGATGATTATAGCTGCACTGGTTCCCAACTTCCTCATGGGATTGATAATTGGAGCAGGATATATTGGTGTTATGATGATGACTTCTGGCTTTTTCCGTCAGATCCCTGATCTTCCCAAATTCTTCTGGCGTTACCCAATTTCATACATCAATTATGGTGCATGGGCATTGCAGGTAATTAATTCAAGAGCATCACCATTCTCAAATGACAACTAA 1749 0.4014 MEIIEQDSTANVITTEDYEMRMKRGKHLVWEDLTVVIPNFGNGHTKRLLNGLSGYAQPNRIMAIMGPSGSGKSTLLDALAGRLSRNVIMSGNVLLNGKKRRLDYGVVAYVTQEDILLGTLTVRETISYSANLRLPVTMTKEEINDIVEGTIMEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTRPCLLFLDEPTSGLDSASAYFVAQTLRNIAHDGKTVISSIHQPSSEVFALFDDLFLLSGGQTIYFGAAEKAVEFFAKAGFPCPSRRNPSDHFLRCINSDFDTVTTTMMASRRIHEQKSLTPSLVNISTAAIKAILIEKYRWSEYATTARARIKEISNIEVDDSDESKSTSQAKWWKQLSTLTHRSFVNMSRDVGYYWIRIIIYVALSLCVGTIFYEVGSSYRAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFYKERLNGYYGIAVYILSNFLSSFPFVALMSIATGTITYYMVKFGPEFSHFLYICLDLITCIAAVESSMMIIAALVPNFLMGLIIGAGYIGVMMMTSGFFRQIPDLPKFFWRYPISYINYGAWALQVINSRASPFSNDN. 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00446 582 Gene3D - 14 267 IPR027417 -
Seca6g00446 582 CDD ABCG_EPDR 28 254 - -
Seca6g00446 582 SMART AAA_5 58 257 IPR003593 GO:0016887
Seca6g00446 582 ProSitePatterns ABC transporters family signature. 172 186 IPR017871 GO:0005524|GO:0016887
Seca6g00446 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 265 IPR027417 -
Seca6g00446 582 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 20 570 - -
Seca6g00446 582 FunFam ABC transporter G family member 11 22 266 - -
Seca6g00446 582 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 28 272 IPR003439 GO:0005524
Seca6g00446 582 Pfam ABC transporter 49 200 IPR003439 GO:0005524
Seca6g00446 582 Pfam ABC-2 type transporter 229 296 IPR043926 GO:0140359
Seca6g00446 582 Pfam ABC-2 type transporter 365 570 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00446 Seca-Chr6 13466364 13474425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00446 47 243 Calmodulin-binding Proteins AT2G36910 30.093 1.28e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00446 K05681 - gmx:100788651 973.77