Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00436 ATGAGGTCTTTAGATGTTGATTGCAAGCCTATGGTTGGTATGGAATTTGATAACATAGAGGCGGCTTGGCATTTTTGGCTCGCATATGGTGCACATACAGGCTTTGGAGTTAGAATGCGATACACAAATAAGAGAAAGGAAGATGGCGCTATTAGTTCAGGTAGGTTTGTTTGTTGCAAGGAGGGAGTGCGAACAAACAAGAAAGGAGCTTTGGTTAACAATCATAGAGCCCTGACTATAATTGACTGCGAAGCAAGGATTTCACTTCTATTAAAGAATGAAAAGCTTGTCGTTCATGAGTTTATAGAGGATCATAACCACCCTCTACAACTTCCAGAGACAACACACATGCTTGCATCACACAGAAAGATAAGTGAAGTCCAAGCATATGAGATTGATCTAGCAGAAGACTCTGGATTAAAGCAAAAGGAAGCATTTCAACTTATGAGCACAGATGCGGGGCATAGAGCTAATGTTGGATATACACGGTTGGATGTAAAAAACTACCTCAATGCAAGAAGACAAAGAATTTATTCTATAAAAGAAAAATGGGCATCTTGTTACATGAAGGAAGCATTCACACTTGGGATGCGGAGTACCCAACTAAGTGAAAGTGTGCATTCTCATTTCAAATCTTGTATGAAACTGAATGTGGATATTGTTCAATTCTTCAAACACTTTGAACAAGTTGTTGATGAGAAGAGATGCAATGAGTTAACTTGTGAGTATGAATCTCGTCATAAGCTCACCATGTTGAGATATGAGTTTTCACCAATACTAATACAGATGGCAAAAGTGTACACACATATTGTATTTGACTTGTTCCAGAATGAGTTTAAGCTTTTCTTAGCTTCATGCATATCTGAGAGAAGTGAGTCTCAGTCCTTATGTCAATATGTTATCACTAGGGTCAACCATGAAGGATCTTGGAGAGTGTCATTTGATCGTGCTTCAACCTCCATATCATGTAGTTGTAGAAAGTTTGAGACATTCGGCATACTTTGTTCACATGCATTGAAAGTGTTTGAAGCAAATGATGTTAAGGTTGTCCCTGATAAGTATATTTTAAAACGATGGACAAGAGAAGCTCGCAGTGGTGTTGTGCATGATGTGAGGGGAAAGGAGGTTGAAGGAGATCCAAAATTATCCAGCACAAGAAGAAAAAGAGCTCCAACTATAGTACAACCATGCATCCAGGCAATGGCATCTCAGGATAAAGATTTAAGAAGTGATAAGGTTGATGGAGTATCTTGTTCGGCACCTCCAACTTATGAGCCCCCTCAAACATTAGAAAACCAATTTAGTTTCACTAGACTTTTGATGGCACCCCTTGATGACATGTCTCAAATCCCCAATCTACATTCAAGCTGA 1371 0.391 MRSLDVDCKPMVGMEFDNIEAAWHFWLAYGAHTGFGVRMRYTNKRKEDGAISSGRFVCCKEGVRTNKKGALVNNHRALTIIDCEARISLLLKNEKLVVHEFIEDHNHPLQLPETTHMLASHRKISEVQAYEIDLAEDSGLKQKEAFQLMSTDAGHRANVGYTRLDVKNYLNARRQRIYSIKEKWASCYMKEAFTLGMRSTQLSESVHSHFKSCMKLNVDIVQFFKHFEQVVDEKRCNELTCEYESRHKLTMLRYEFSPILIQMAKVYTHIVFDLFQNEFKLFLASCISERSESQSLCQYVITRVNHEGSWRVSFDRASTSISCSCRKFETFGILCSHALKVFEANDVKVVPDKYILKRWTREARSGVVHDVRGKEVEGDPKLSSTRRKRAPTIVQPCIQAMASQDKDLRSDKVDGVSCSAPPTYEPPQTLENQFSFTRLLMAPLDDMSQIPNLHSS. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00436 456 MobiDBLite consensus disorder prediction 405 428 - -
Seca6g00436 456 ProSiteProfiles Zinc finger SWIM-type profile. 310 346 IPR007527 GO:0008270
Seca6g00436 456 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 6 129 IPR031052 GO:0006355
Seca6g00436 456 Pfam FAR1 DNA-binding domain 25 110 IPR004330 -
Seca6g00436 456 SMART 26again6 321 348 IPR006564 GO:0008270
Seca6g00436 456 Pfam SWIM zinc finger 321 344 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00436 Seca-Chr6 13060230 13062138 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g00436 FAR1 3.3e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00436 - - cam:101507947 461.84