Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00403 ATGATGAGGCTGCAGACATATGCGGGTCTTAGTTTGATAGCTACTCTGGCTATTACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGGTTTATCTGGCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTCTGGTCATCATGTGTGTCCTGTGGCAGTTAACCAAAAAGGTTTTCCTTGGCTCCCTTAGAGAGGCTGAGGTTGAGAGGCTTAATGAGCAATCGTGGAGGGAGGTTATGGAAATTCTCTTTGCAATTACTATCTTTAGGCAGGACTTTTCTATTACATTCCTTGCCTTGGTTACAGCACTCTTGTTAATCAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTCGAGTATATAGAGACCACTCCTTCCGTGCCCATGTTGTCTCAAGTTCGAATTGTATCTTTTATGGGTTTCCTTCTTCTTCTAGATGGCCTCTTTTTGTATAGTTCTGTGAAGCATTTGATACTATCAAGGCAGGCTTCGGTTTCACTCTTCTTTGCTTTTGAGTACATGATACTGGCAACAACAACAGTGTCAATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAGGAAACCAGTCTTCACATTTTACCTGGAACTTGTTAGGGACTTGCTTCACTTGTCTATGTATCTCTGCTTCTTTCTGGTAATTTTCATAAACTATGGCGTTCCTTTGCACTTAATAAGGGAGCTGTACGAGACATTTAGGAACTTCAAAATTCGTGTTGCAGATTACATACGTTATCGCAAGATTACTTCTAACATGAATGACCGGTTTCCAGATGCAACCCCTGAAGAACTTAATGTAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACTACTGCTAAGAAACTTATATGCGGACATCTTTTTCATGTTCATTGCCTCCGATCATGGCTGGAGAGGCAGCATACTTGCCCTACCTGCAGAGCACTGGTTGTACCACCAGAAAATGGGACAACTGCTGCTGCTGGGGGGCAGCAAGGATCACAGTCAGATGCTCATCGACATGGGACAGGAACTGGAAGCACAACTCAAGCTGAGGTTGGCAGTGGGATGGAAACTGATAATTTGAATTGGCATCAAGCAAGACTTCAAGCTGCTGCTGCAGCAGCTTCAATATATGAGAAGTCTTATGTTTACCCCTCTGCATCTTTTGCATGGTCCCCTGGTTACACACTTTATCCCCCGTCTCAAAGGTCTGTGGCTGAATCATCTAGTACTGAGCTTAATGGAGAACAAGCTTCCAGTGAGCAAGCACAAAAGCAGTTTGTGATCCCTGGGCCAATGAATGTATCCTTTCCTCCAATGCGAAGCTTCTATTTTGTACCTTCTCAAACACATGCAGCTCACATGAACTATGGGGAGGGGTTTGCAAATGATCCGAATATGCCAAACTCTCAGCTGGAAGCTCAAAGAAAACTCCAGAATGAGATTCTGCAAAATCAGCCCCAGCTTCTGCAGAAGACAAATGTTGAGAAAAGTGTAGATGAGGACACATCATTATCAGATAGCAGAGGCAAGCACATCGCTTCCTCTTCATCTGTATCTAGTCATGACTGTCATGAGGAGATTCAAGACAACAGAGCATAA 1653 0.4313 MMRLQTYAGLSLIATLAITYHAFNSRGQFYPAMVYLATSKISLVLLLNMGLVIMCVLWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSITFLALVTALLLIKALHWLAQKRVEYIETTPSVPMLSQVRIVSFMGFLLLLDGLFLYSSVKHLILSRQASVSLFFAFEYMILATTTVSIFVKYIFYVSDMLMEGQWERKPVFTFYLELVRDLLHLSMYLCFFLVIFINYGVPLHLIRELYETFRNFKIRVADYIRYRKITSNMNDRFPDATPEELNVSDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAAGGQQGSQSDAHRHGTGTGSTTQAEVGSGMETDNLNWHQARLQAAAAAASIYEKSYVYPSASFAWSPGYTLYPPSQRSVAESSSTELNGEQASSEQAQKQFVIPGPMNVSFPPMRSFYFVPSQTHAAHMNYGEGFANDPNMPNSQLEAQRKLQNEILQNQPQLLQKTNVEKSVDEDTSLSDSRGKHIASSSSVSSHDCHEEIQDNRA. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00403 550 MobiDBLite consensus disorder prediction 341 371 - -
Seca6g00403 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Seca6g00403 550 Pfam Ring finger domain 291 330 IPR001841 -
Seca6g00403 550 MobiDBLite consensus disorder prediction 502 550 - -
Seca6g00403 550 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Seca6g00403 550 SMART ring_2 292 329 IPR001841 -
Seca6g00403 550 SUPERFAMILY RING/U-box 272 336 - -
Seca6g00403 550 CDD RING-H2_synoviolin 289 330 - -
Seca6g00403 550 PANTHER RING ZINC FINGER PROTEIN 1 510 - -
Seca6g00403 550 MobiDBLite consensus disorder prediction 340 371 - -
Seca6g00403 550 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00403 Seca-Chr6 11709900 11716149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00403 1 534 C3H Transcription Factor Family AT3G16090 63.904 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00403 K10601 - gmx:100816441 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00403 6 11709900 11716149 Seca6g00403 6 11709900 11716149 ECH