Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00393 ATGGGAACGCGACCGCGGCAATCGTGTGGAGACGAAGAGGAGGAGGAACTGTTGGGTTGCGGAACCACGATTTCGGGACAATCAGCGTCGACGAGCAGAAGTGCTGGATTGCCATCTAGCCGGAGTGAGCAGACGACGACAACAGCAGCTGGTGATAACACTTTTCTCAAATTGAACCATCTTGACATACATGCTGATGATGATGCTGGATCACAGGGAGCAGTTGCTAGCAAGAAGAAAAAGAGAGGCCAACGGGCTGTTGGAGGTGATAAGAGTGGAAGAGGGCTCCGCCAATTTAGTATGAAAGGTTTTTTATCTATCACATTATTTTTTGGAGGTCATGTTGATAATTTTCTGCCTGGTTTTAACTCTATTTATTCTTGGTTGTCTCCAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTGCTGATCCAAGCAATAGTGTTTTGTCCCCTGATCAGCAACAATATGATGAGAAAAACATCCGTCGACGGGTCTATGATGCTCTGAACGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAAGGTCTTCCTCGTACTAGTCTGAATGATATTGAAGAACTAAAGACAGAGCGTCTTGGACTCAGGAATAGAATTGAAAAGAAAGCAGCCTATCTGCAGGAGCTTGAGGAGCAATTCGTAGGTCTTCAAAACCTTATTCAACGAAATGAGCAATTATATAGCTCAGGAAATCCTCCCAGCGGAGGTGTATCGTTACCTTTTATTCTGGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCCTTTGAGCTGCATGATGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGAGTGATAATATGACACACAATCCTACTGATGGAGGGGAAGGTTCTAGCATGTCAGGATTGTATCAACCGCAGGTTCCTCCTTCAGGTTCAAACATGTCAGTTCGGCCTCCCACATCACCTCCCCTCCCTGGAATATTAAAGGCAAGAGTTAAGCAAGAGCATTGA 1119 0.4361 MGTRPRQSCGDEEEEELLGCGTTISGQSASTSRSAGLPSSRSEQTTTTAAGDNTFLKLNHLDIHADDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKGFLSITLFFGGHVDNFLPGFNSIYSWLSPVCEKVESKGRTTYNEVADELVAEFADPSNSVLSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKAAYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDNMTHNPTDGGEGSSMSGLYQPQVPPSGSNMSVRPPTSPPLPGILKARVKQEH. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00393 372 SMART DP_2 210 370 IPR014889 -
Seca6g00393 372 Gene3D - 124 208 IPR036388 -
Seca6g00393 372 MobiDBLite consensus disorder prediction 67 92 - -
Seca6g00393 372 MobiDBLite consensus disorder prediction 1 49 - -
Seca6g00393 372 CDD DP_DD 208 311 IPR014889 -
Seca6g00393 372 MobiDBLite consensus disorder prediction 318 350 - -
Seca6g00393 372 MobiDBLite consensus disorder prediction 21 49 - -
Seca6g00393 372 Pfam E2F/DP family winged-helix DNA-binding domain 132 203 IPR003316 GO:0005667|GO:0006355
Seca6g00393 372 SMART E2F_TDP_2 91 203 IPR003316 GO:0005667|GO:0006355
Seca6g00393 372 Pfam Transcription factor DP 211 325 IPR014889 -
Seca6g00393 372 PANTHER TRANSCRIPTION FACTOR DP 23 327 IPR015648 GO:0005667|GO:0051726
Seca6g00393 372 FunFam Transcription factor-like protein DPB 125 208 - -
Seca6g00393 372 Coils Coil 219 253 - -
Seca6g00393 372 PIRSF Txn_factor_DP 5 372 IPR015648 GO:0005667|GO:0051726
Seca6g00393 372 Gene3D Transcription factor DP 209 331 IPR038168 -
Seca6g00393 372 SUPERFAMILY E2F-DP heterodimerization region 209 326 IPR037241 -
Seca6g00393 372 FunFam Transcription factor-like protein DPB 209 333 - -
Seca6g00393 372 MobiDBLite consensus disorder prediction 317 372 - -
Seca6g00393 372 SUPERFAMILY "Winged helix" DNA-binding domain 130 204 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00393 Seca-Chr6 11348286 11352360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00393 132 321 E2F-DP Transcription Factor Family AT5G02470 54.450 1.51e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca6g00393 DP 4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00393 K04683 - qsu:112000390 560.066