Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00388 ATGTCAGAAGTTACTTCAGTGGACACCCAACAAAGTACAGAGTTCCTTGGGCCCAAAACCACAACGAGGCTAAACCTGTCAAACCCCCAAACTACCCACATCTTTAGATCAAAATTACCAGACATACCCATCCCAAACAACATCCCACTCCACACCTATTGCTTCCAAAAACTCCCCGAAGTCGCCGACCGGCCATGCCTCATCGTCGGCGGATCCGCCGGCAAAACCTACACCTACGCCGAAACTCACCTCGCATGTCGAAAATTCGCCACCGGTCTCTCCAATCTCGGCATTAAAAAAGGCGACGTCATCATGATCCTTCTCCCAAACTGTCCAGAGTTCGTCTTCTCCTTCATGGCGGCCTCCATGCTCGGCGCCTCCGCCACCACCGCCAATCCATTCTACACCGCCGCCGAAATCTCAAAGCAACTCACCGCCTCCAAAGCCAAACTCGTCGTCACTCGTTCCACGTACGTCGGGAAGCTTCCCGAAATAGGGGAAGATCTGAAGGCGGTTATAACCGTCGACGCACCGCCGGAGAACTGCTTGAGTTTCTCGGCGGTTTCGGAGGCGTCGGAGGAGAGTGAAGTTCCAGAAGCGGAGATCGCGGCGGAGGATGCAGTGGCGTTGCCGTTCTCGTCGGGGACGACGGGGTTAGCGAAGGGAGTGGTTCTGACGCATAAGAATTTGGTAACTAGCGTGGCTCAGCAAGTTGACGGAGAGAACCCGAACCTGTACCTGAGGGAAAACGACGTCGTGTTATGTTTGCTTCCGTTGTTTCACGTATTCTCAATGCACACGGTGATGATGTGTGCGCTGAGAAGAGGGAGTGCGATATTGGTGGTAGAGAAATTTGAGATAGGGGCGTTGTTGGAGATGATAGAGAAGCATAAGGTGTCGGTGGCGATGGTGGTGCCGCCGTTGGTGCTGGCTCTCGCTAAGAACCCAAAGGTGGGGGAATATGACCTAACCTCCATACGGTTAGTTATGTCAGGGGCTGCGCCTCTCGGGAAGGAGCTCGAAGATGCTCTCAGCAGCAGGTTGCCTCAGGCAGTTTTAGGACAGGGGTACGGGATGACAGAGGCTGGGCCGGTGTTGGCCACGTGTTTGGGGTTTGCAAGGGAGCCATTCCCATCAAAGTCAGGGTCGTGTGGCACTGTGGTGAGAAATGCAGAGTTGAAGGTCATTGACCCTGAAACTGGTTCTTCTCTTCCCCGTAACCACCCCGGTGAGATTTGCATCCGAGGCCAACAGATAATGAAAGGATACCTGAATGATGAGAAGGCGACTGCAACAACTATTGATGTAGATGGATGGCTTCATACGGGTGATATAGGATACGTAGATGATGATGATGAGATTTTCATCGTTGACAGGGTGAAGGAACTCATCAAATTCAAAGGCTTCCAGGTGCCGCCGGCAGAACTTGAAAACCTTCTTATAAACCACCCTTCCATTGCAGACGCAGCTGTTGTGCCCCAAAAGGATGATGTTGCGGGTGAGGTTCCAGTGGCTTTCGTGGTGAGCTTTGATCTTACTGAAGAGGCTGTAAAGGAGTTTATAGCAAAACAGGTAGTGTTTTACAAAAGACTACACAAAGTGTACTTTGTTCATGCAATTCCAAAGTCTCCATCCGGAAAGATATTAAGAAAAGAACTCAGAGCAAAGCTCGCAAGGATCACCCAGACGGCCTAA 1695 0.5156 MSEVTSVDTQQSTEFLGPKTTTRLNLSNPQTTHIFRSKLPDIPIPNNIPLHTYCFQKLPEVADRPCLIVGGSAGKTYTYAETHLACRKFATGLSNLGIKKGDVIMILLPNCPEFVFSFMAASMLGASATTANPFYTAAEISKQLTASKAKLVVTRSTYVGKLPEIGEDLKAVITVDAPPENCLSFSAVSEASEESEVPEAEIAAEDAVALPFSSGTTGLAKGVVLTHKNLVTSVAQQVDGENPNLYLRENDVVLCLLPLFHVFSMHTVMMCALRRGSAILVVEKFEIGALLEMIEKHKVSVAMVVPPLVLALAKNPKVGEYDLTSIRLVMSGAAPLGKELEDALSSRLPQAVLGQGYGMTEAGPVLATCLGFAREPFPSKSGSCGTVVRNAELKVIDPETGSSLPRNHPGEICIRGQQIMKGYLNDEKATATTIDVDGWLHTGDIGYVDDDDEIFIVDRVKELIKFKGFQVPPAELENLLINHPSIADAAVVPQKDDVAGEVPVAFVVSFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKELRAKLARITQTA. 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00388 564 SUPERFAMILY Acetyl-CoA synthetase-like 33 559 - -
Seca6g00388 564 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 555 - -
Seca6g00388 564 Gene3D - 26 460 IPR042099 -
Seca6g00388 564 FunFam 4-coumarate--CoA ligase 2 462 560 - -
Seca6g00388 564 MobiDBLite consensus disorder prediction 1 22 - -
Seca6g00388 564 FunFam Long-chain-fatty-acid--CoA ligase FadD 36 461 - -
Seca6g00388 564 ProSitePatterns Putative AMP-binding domain signature. 210 221 IPR020845 -
Seca6g00388 564 Pfam AMP-binding enzyme 62 466 IPR000873 -
Seca6g00388 564 CDD 4CL 44 553 - -
Seca6g00388 564 Gene3D - 461 560 IPR045851 -
Seca6g00388 564 Pfam AMP-binding enzyme C-terminal domain 475 547 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00388 Seca-Chr6 11240041 11248820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00388 28 473 Monolignol Biosynthesis Gene Families AT1G65060 67.562 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00388 K01904 - gmx:100790396 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00388 6 11240041 11248820 Seca6g00388 6 11240041 11248820 ECH