Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00380 ATGGCGGCGGGGAACTTGAATAATAACAATAATATGGTGCCGCCATTTCTGAGCAAGACGTATGAGATGGTGGATGACTCCTCCACCGACTCCATCGTTTCTTGGGGTCACAACAACAACACCTTCGTTGTTTGGAATGTCACTGAATTCGCCAAACACATCTTGCCCAAATATTTCAAGCACAATAACTTCTCCAGCTTTGTCAGGCAGTTGAATACTTACGGTTTTAGAAAGGTTGACCCAGACCGCTGGGAATTTGCAAATGAAGGGTTTCTAAGGGGTCAAAAGCAATTGTTGAAGAGTATCAGTAGGCGAAAATCTACTCATGTAAATGGTACTAGTCAACCACAGCCTCAGGTGCAAAGCTCATCTGTTGGGGCATGTGTTGAAGTTGGCAAGTTTGGGCTTGAGGAAGAGATTGAAAGGCTGAAAAGGGATAAGAATGTTCTTATGCAGGAGCTTGTTAGGTTAAGACAACAGCAACAAACGACTGATAACCAATTGCAAAGTGTAGGGCAACGTGTGCAGACAATGGAGCAGCGTCAGCAACAGATGATGTCTTTCTTGGCGAAGGCCATGCATAGTCCGGGCTTCTTGGCTCAGTTTGTGCAGCAGCAGAATGAAAGTAATAGACACATCACAGGAGGTAAAAAGAGGAGGCTCCACAAGCAGGAAGAAGATAGTTTAGCTACCAAACATCAACATAATTCTCTTGATGGACGGGTTGTCAAGTACCAGCCATCGATAAATGAGGCAGCAAAAGCATTACTTTGCCAGATATTGCAAATGAACAATACTACAAGGAAGGAATCATCAATTAAGAACCCTGATGCATACCTTATTGATGATGTTCCTTCAGCTGTTGCATTAGATAGCAGTAGCTCGTCCACTCGGGTTTCTGGTGTAACGCTTTCTGAGGTTCCACCTATTTCTGGACAATCATGTATGGCAGTAGAATCTCAATTTCCTGTCAGTTGTATGACCAATAGCATATCTGAGGCGCAATCTTCACCTGCTGTGTTGAATGACTGTGTTAATGCAGCTGAATTTCCAGAATTAACGGCACATAATTGCCAAGATAATGCTTTGGATTTTGGTCAAATTCAAGGGATGGGGACAGAGTGCAGCTTCCTGAATCCTGATCAAAATTTTGTGGGGTGTGATACTGGGAACGAGGAGATAGATGTGATATCAAGTGTTTTAGATGGGACACAGTCTGTAGAAGTTGATGCTTTTTCTACTGATGCAGATGGAATTCCTAAACTTCCAGGAATCAATGATGAATTCTGGGAACAGTTTTTTAGGCCAAGCCCACTTACTGGAGATACAGATGAAGTTAAATGCAGCTCTCTGGGATGTGGGTTGACTGAGGACCAGGAATTATCATCAGAAAAGGAGATTCAGCAGGAAAAGATGGATAAGAAACAGCGTATTGACCATCTTACACAACAGATGGGACTTCTTGCATCAGAGTCTTAA 1479 0.43 MAAGNLNNNNNMVPPFLSKTYEMVDDSSTDSIVSWGHNNNTFVVWNVTEFAKHILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKSTHVNGTSQPQPQVQSSSVGACVEVGKFGLEEEIERLKRDKNVLMQELVRLRQQQQTTDNQLQSVGQRVQTMEQRQQQMMSFLAKAMHSPGFLAQFVQQQNESNRHITGGKKRRLHKQEEDSLATKHQHNSLDGRVVKYQPSINEAAKALLCQILQMNNTTRKESSIKNPDAYLIDDVPSAVALDSSSSSTRVSGVTLSEVPPISGQSCMAVESQFPVSCMTNSISEAQSSPAVLNDCVNAAEFPELTAHNCQDNALDFGQIQGMGTECSFLNPDQNFVGCDTGNEEIDVISSVLDGTQSVEVDAFSTDADGIPKLPGINDEFWEQFFRPSPLTGDTDEVKCSSLGCGLTEDQELSSEKEIQQEKMDKKQRIDHLTQQMGLLASES. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00380 492 MobiDBLite consensus disorder prediction 211 234 - -
Seca6g00380 492 SUPERFAMILY "Winged helix" DNA-binding domain 12 105 IPR036390 -
Seca6g00380 492 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g00380 492 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g00380 492 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g00380 492 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g00380 492 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 288 IPR027725 -
Seca6g00380 492 FunFam Heat shock transcription factor 1 9 106 - -
Seca6g00380 492 Gene3D - 7 106 IPR036388 -
Seca6g00380 492 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g00380 492 MobiDBLite consensus disorder prediction 219 234 - -
Seca6g00380 492 Coils Coil 464 484 - -
Seca6g00380 492 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g00380 492 Coils Coil 133 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00380 Seca-Chr6 11018954 11021962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00380 11 492 HSF AT5G16820 53.815 6.96e-155 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca6g00380 HSF_DNA-bind 2.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00380 K09419 - gmx:100793665 578.17