Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00371 ATGATGGGGAGAACACCATGCTGTGATGAGAGTGGTTTGAAGAAGGGTCCTTGGACCCCAGAAGAGGATAGAATATTGGTGGATTACATTCAGAAACATGGCCATGGAAGTTGGAGAGCACTTCCAAAGCTTGCAGGACTCAACAGGTGTGGCAAGAGTTGCAGGCTAAGATGGACTAACTATTTAAGGCCTGATATCAAAAGAGGAAAATTCTCTGAGGAAGAAGAACAACTCATCATCAATTTACATTCAGTTCTTGGGAATAAGTGGTCAGCTATAGCAGGTCATTTGCCAGGGAGGACTGATAATGAAATCAAGAACTTTTGGAACACTCATTTAAAGAAAAAGCTTCTTCAAATGGGGTTAGATCCAGTGACTCATCGTCCAAGATTGGATCATCTTAATCTTTTATCCAATCTCCAACAATTGCTGGATGCTACAAACATTGTCAATAGTTTGAGTTTAACAAACACTTGGGACATGAATGCTCTGAGGCTGCAATCAGATGCAACACAATTAGCCAAACTCCAATTGCTGCAGAACATGCTTCAAGTCCTTTCTGGTGCCACTACTCCTAACACAAATTTGGAGTTACTCAATCCATTTGGACCATCATCCTCACTTCAAGAAAATTTTCTGCATGAACTCATGGGATTGAATCAGTCTAAGCTCCAAAGCCTTTACAATAGTTCAACTAGTTTTCCTTCTCAAAATCAGCCAAATTTTCAAGGCTTTGAAGCCCTGCAGCAGCCAGCTCTGTCCACTGAGCATCATCACATGAATGGTAGTGGCAGCAGCATTAGTAGTTGCATGAAGTCTCTAAAGGTTGATGAGAAACTTAATGCCACAATGAATTCTTCATCAACACCATTGAATTCACTTCCAAATCTGGTTTCAGCATCACCTGAATGTTCCAAGGTAAAACCAAATGAGTGTTCCAATCCTTCTTCCACTTCAACCACCTTTGAAATGTGGGGAGATTTCATGTATGAGGAAGTAAGTGATGCTTATTGGAAAGATCTCATAGAGTAA 1032 0.407 MMGRTPCCDESGLKKGPWTPEEDRILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIINLHSVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRLDHLNLLSNLQQLLDATNIVNSLSLTNTWDMNALRLQSDATQLAKLQLLQNMLQVLSGATTPNTNLELLNPFGPSSSLQENFLHELMGLNQSKLQSLYNSSTSFPSQNQPNFQGFEALQQPALSTEHHHMNGSGSSISSCMKSLKVDEKLNATMNSSSTPLNSLPNLVSASPECSKVKPNECSNPSSTSTTFEMWGDFMYEEVSDAYWKDLIE. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00371 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 281 - -
Seca6g00371 343 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Seca6g00371 343 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Seca6g00371 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Seca6g00371 343 Gene3D - 70 117 - -
Seca6g00371 343 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca6g00371 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca6g00371 343 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Seca6g00371 343 Gene3D - 14 67 - -
Seca6g00371 343 SMART sant 67 115 IPR001005 -
Seca6g00371 343 SMART sant 14 64 IPR001005 -
Seca6g00371 343 FunFam Transcription factor MYB39 70 131 - -
Seca6g00371 343 FunFam MYB-related transcription factor 14 67 - -
Seca6g00371 343 CDD SANT 70 113 IPR001005 -
Seca6g00371 343 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Seca6g00371 343 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00371 Seca-Chr6 10776808 10778100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00371 2 343 MYB Transcription Factor Family AT5G16770 50.833 3.37e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g00371 Myb_DNA-binding 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00371 K09422 - gmx:547488 509.99