Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00364 ATGAGAGATATTTGTAGAAACTTCCAGCGAGGCAGCTGTCAATATGGAGAAAGGTGTAGATATCAACATGTACAACAACAACAGCGAAAATCTAATGTTCATGGGTTTGGAGGACAGAGCAATTCTCACCAACAGCAAAATACTAATCCTTTTGGCTTTGGGTCTCCCTCTGGCCCTGGCCCTGCCTCACACCAACAGCAAAAGACCAATCCTTTTGGTTTTGGTGTGCAGGACAGCTCCCAGTTAAATGGGGGTCCTCATTCTGACTTCAAACAAAACCAATTCAAGCCTTTTGAAAACAAATGGAATCGACTTTCATCTAAACCCCAGGGTGGTGCTTCACGTCAATCTGATAACCATTCTCAATCCGTGAATCATAAATGCACAGATCCTGAGATCTGCAAGCGCCAGATTGCAGAAGATTTTGAGCAAGAGAAACCACTTTGGATACTTACATGCTACAGTCATTGCAAAGGTGCTCCTTGTGACATTGTTGGTGATATTAGCTATGAAGAATTGCGGGCAGCAGCTTATGAATATGCTAAGAATGGAATGAGCTTGCAATCAATAGTTGAGAAAGAGAGAAATATACTAAAATCCAAGTTGGTTGAGTTTGAGAGACTACTTTCTGAACCCTACAAAATGCCACTGAATTCTTCTCTTGACAGTCAAACGTACCAATCCAGTGGAGCCAATGCAAACCCTTTTCCACTAACCACTCAAAATAATGGTCCTTTATCAGTCTCAAGCTTTAGCCAACTGGGTACTTCATTGAACATGGATTTTCAACGGCCCTCTCCACTGCAAATGAACACTCAGACGCAGCCTAGTCCCTTTGGAAGTGGAGGAAACTCTTTTGCATCCAACACAGCAAACCTATTCGGCAGTGGCAGCTCAGGTGCTCAAAGCAGCCCCTTCTCTACACCAACGGAGTTGACAATGTTTACGGGTCCAACTTCTCAGCAATCATCCGTTGCTTTCAATAACTTTAGCTCCACTACAATGCTTCAGACGTCAGATATTCAGTTGAATAAGTCCCAAGTGGAGAATGTGTCCGGAGATGCCAGTATTTGGTTAAAAGAGAAATGGAAGCCTGGAGAGGTATATTAG 1110 0.4324 MRDICRNFQRGSCQYGERCRYQHVQQQQRKSNVHGFGGQSNSHQQQNTNPFGFGSPSGPGPASHQQQKTNPFGFGVQDSSQLNGGPHSDFKQNQFKPFENKWNRLSSKPQGGASRQSDNHSQSVNHKCTDPEICKRQIAEDFEQEKPLWILTCYSHCKGAPCDIVGDISYEELRAAAYEYAKNGMSLQSIVEKERNILKSKLVEFERLLSEPYKMPLNSSLDSQTYQSSGANANPFPLTTQNNGPLSVSSFSQLGTSLNMDFQRPSPLQMNTQTQPSPFGSGGNSFASNTANLFGSGSSGAQSSPFSTPTELTMFTGPTSQQSSVAFNNFSSTTMLQTSDIQLNKSQVENVSGDASIWLKEKWKPGEVY. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00364 369 SUPERFAMILY CCCH zinc finger 3 28 IPR036855 GO:0046872
Seca6g00364 369 MobiDBLite consensus disorder prediction 30 128 - -
Seca6g00364 369 Gene3D - 1 70 - -
Seca6g00364 369 Pfam CCCH-type zinc finger 4 23 IPR041367 -
Seca6g00364 369 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Seca6g00364 369 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Seca6g00364 369 MobiDBLite consensus disorder prediction 269 311 - -
Seca6g00364 369 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 4 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00364 Seca-Chr6 10555969 10562147 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca6g00364 zf-CCCH 1.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00364 K14321 - gmx:100814339 508.449