Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00358 ATGGATTTTAATAGTGATGATTCAGCTGTTAATCTGGATGATGATAGGGATGTAAGTTATAGTGACTCTTCTAGCAATCATGAAATGAGTAGTGGAAATGATATACATAGTGATGAGGGAAATGTGTCTATTCAAGCAGAGGCTGATATGGATGAGGAGAATGATGTTATGGATAGAGATGTTAGAGACGATGTGTCAAGGAGGATAATTGACTTGACAAGTGATGATATAAGGGCTTTGGAGATCGCTAGTGAAGAACATGCGTTCAATTTTTACTTTTCTTATGCAAAATGTAAAGGATTTGCTATGAGGAAGGATGATGTACTTCGAGACAAAAAAGGGATGGTCATAATGCGGCAGTATTTATGTAGTAGGGCTGGTATGAGGGACAAAAAGTATTTGATTAGGTTAGATCGGAAAAAGGAACACAGACCTCTTACGCGTACCAATTGTCAAGCTAAGTTGAGAGTTAGGTTTGATTACAAGACGGGTAAATGGAAGGTTGTTTCACTTGAAGAATCTCACAACCATGATTTAACCCCTGCAAAGTTTGTACCTCTAATTCGTAATTATCGGGGATTGACTGATGGGGACAAAGCCCAAGTGGATGCATTACATTCTCATGGCATTAGGCCTTGCCAGATTATGGGTTTTATTGTTGATCAAAAAGGAGGGTATAGAAATGTTGGATTTTCAAAGAAAGATTTGTACAACTACATAGATGAGGTTAAGCGTGGTAAGATAAAAGATGGGGATGTTGTTGCTGGCTTAATTTATTTGCAAGGAAAGGCGGATAATAATCCAATGTTTTTTTCAAGATTTTTATGTTCTGAGGATGGTAAACTTACTCATCTATTCTGGTGTGATGCAAATAGTCGTGCGGATTTTCAATTTTTTGGGGATATGCTTGCATTTGATGCAACATACAAGAAGAACAGATATAAATATCCATTGGTCATATTTTCTGGGAAAAATCACCACTCTCAAACAGTAATATTTGAGTGTGCTCTCATTGCTGATGAAACAATTGATACTTATAAATGGGTGCTAAGGATGTTTTCGGAAGCAATATTCCACAAGCATCCAACTGCAGTGGTGACTGATGGAGATGGTGCTATGAGGGAAGCTATTAAGACAGTATTTCCAAATGCGTGTCATAGGTTATGTGGGTGGCATTTGAATAAGAATGCATGTGAAAATGTTAAGAATCCAAAATTTTTGGATGATTTCAAGAAAGCAATGTATAGCAATTTCACTCCAAATCAATTTGAAGAGTTTTGGGAGGAAATGGTTAGCAAACATGGTCTACAAGGTAATAGGTGGGTTAAGAAAACCTATGATATCAAGGAAATGTGGGCGTCTGCCTATTTACGTGACAAATTCTTTACTCACATAAGAACGACATCTCAATGTGAAGGCATTAATTCACTAATAAAGGCTTATGTTAGGAGTAAGAATACTATTATAGAATTTATTCATAATTTTGAATATTCTCTTAGGGAATATAGGTACAAGGAATTGTGTTCTGACTTTAATTCTATTTATTTTGAACCTGTTCTTACGACCTCACTTCAGAAGATAAAGCGTCAAGCTTCTAAGGTGTTCACTTTGGATATTTTTAAAGATGTCAAGTATGAGATTGAAAGGGCAGGTGGTTTAAATGTAATTGAGCGTTCACTTGATGGGGTTAATGTTGTTTTCAAATTAAATGAATATTGTAAGCCTCGTAGTGAACGCTTTGTTGTTTATGATAAAGAGAATTCTAAATTTGTTTGTGATTGTCGGTTGTTTGAATCTTGTGGCATTCCATGTCGACATATTTTTTGTTCTATGAGACTGGAGCACATAGATGCTATACCCCCATGTATGATTTGCAAACGGTGGAGGAAGGATGTTAAGAGTGACTTGATGATATCGGATGGTTTGGATGAGGTAGAACCTGACATGATGAGGGTTTGTCGTGTTGTGGTTGCTAGCTCTCATTGTAACAGTCTTTGTGATATGGTTTCCCAAAAGCGTGAGCATTTTAAGGAGTTTTTAAATGACATTATGAAGTTGAAACAGAAGTATGAGAGATTGTGTTCCACTAGTAGCACATCTAATGTTGAGGTAAATGTTGTACAAAATCCCACTGTTGTGGAGACGAAAGGGGCTCCTATGAAGACAAGGAAGAGGTGTAAGAGTAAGAGGTGTTCAAACTGTAACATTTCTGGACATGTTATCACTACCTGTCCTAGGTTGTTTCCACCACCAGAAGATGATGAAGTCAACATTAATGACGAAGAGCATGGTCCTGGGTCACAAACTCTTAGGAGTGATGCTGCCCAAGTAATTCCCTAG 2340 0.3718 MDFNSDDSAVNLDDDRDVSYSDSSSNHEMSSGNDIHSDEGNVSIQAEADMDEENDVMDRDVRDDVSRRIIDLTSDDIRALEIASEEHAFNFYFSYAKCKGFAMRKDDVLRDKKGMVIMRQYLCSRAGMRDKKYLIRLDRKKEHRPLTRTNCQAKLRVRFDYKTGKWKVVSLEESHNHDLTPAKFVPLIRNYRGLTDGDKAQVDALHSHGIRPCQIMGFIVDQKGGYRNVGFSKKDLYNYIDEVKRGKIKDGDVVAGLIYLQGKADNNPMFFSRFLCSEDGKLTHLFWCDANSRADFQFFGDMLAFDATYKKNRYKYPLVIFSGKNHHSQTVIFECALIADETIDTYKWVLRMFSEAIFHKHPTAVVTDGDGAMREAIKTVFPNACHRLCGWHLNKNACENVKNPKFLDDFKKAMYSNFTPNQFEEFWEEMVSKHGLQGNRWVKKTYDIKEMWASAYLRDKFFTHIRTTSQCEGINSLIKAYVRSKNTIIEFIHNFEYSLREYRYKELCSDFNSIYFEPVLTTSLQKIKRQASKVFTLDIFKDVKYEIERAGGLNVIERSLDGVNVVFKLNEYCKPRSERFVVYDKENSKFVCDCRLFESCGIPCRHIFCSMRLEHIDAIPPCMICKRWRKDVKSDLMISDGLDEVEPDMMRVCRVVVASSHCNSLCDMVSQKREHFKEFLNDIMKLKQKYERLCSTSSTSNVEVNVVQNPTVVETKGAPMKTRKRCKSKRCSNCNISGHVITTCPRLFPPPEDDEVNINDEEHGPGSQTLRSDAAQVIP. 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00358 779 ProSiteProfiles Zinc finger SWIM-type profile. 580 615 IPR007527 GO:0008270
Seca6g00358 779 SMART 26again6 590 617 IPR006564 GO:0008270
Seca6g00358 779 MobiDBLite consensus disorder prediction 762 779 - -
Seca6g00358 779 MobiDBLite consensus disorder prediction 751 779 - -
Seca6g00358 779 Pfam MULE transposase domain 303 396 IPR018289 -
Seca6g00358 779 PANTHER OS01G0519700 PROTEIN 81 726 - -
Seca6g00358 779 MobiDBLite consensus disorder prediction 23 40 - -
Seca6g00358 779 MobiDBLite consensus disorder prediction 1 40 - -
Seca6g00358 779 Pfam FAR1 DNA-binding domain 90 180 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00358 Seca-Chr6 10401290 10403629 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g00358 MULE 3.1e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00358 - - ccaj:109811679 819.305