Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00355 ATGATAGATGATTTTAATGATATTAAGAAGATTGATATGAAAAATATCAGTGAAGATGATCTTCGTAAATATGATTTTGCCGATCTAGATGTGGCCCACAAATTCTACATATGGTATGGTCGGTCGAATGGGTTCTCTGTTCGTAAAAGCAATGTAGTATCGAACAGTAAGGGTGACATTTTGCAGCAAACATTTGTTTGTTCTGCACAAGGACATGGAAGGGCTAGGCGTTCCACAAGAAGTTCTAAAAAGAGACAATCGAAACTGCTAATGAGGTTTGATTGTAAAGCAATGTTTCGTGTTCACATCAACGTTAACTCAGGCCGATGGTATGTCACGATATTTGATGATAGTCACAATCGCAAATTGTTGGAAGAACAACATTGTGGTATGTTACCAGCATATAGAAAGAGGACAGAATCTGACATTATGCAGATTAACAATTTCAGAGAAACAAATTTTCATACCCTTGAGAGGTCAGCTTCAAGACACTTCACAAGGAGTTCATTTTCATTGTTCAGTGCAGTTCTTAACAAAGCATCTCTAATGAAGGTAATTGATTGTGAAGACATGGACACATATCATATATACATAGTGTCAAAGTATTGTTCTTCTGGAAGCATGTGGAATGTGTCATTTTGTGCAGAGCCCATTCAAATTAACTGTTCATGCCTACGAATGGAATCCATAGGCTTGCCATGCGAGCACATCATAGTTGTATTGGTTTACTTGGACTTTTGTGAACTACCAAAGTGTTTGATATTGGATAGGTGGACAAAGAGTGTGAAGGCTTCTATTCATGGGACTTACATTGATGGTTCATGCTCAACATCCACTATATCTCTTGCAGTTAAGTATCGCTTGCAACCCATCTTGTCTGCGTGTTCAAGAACTAACTTCACTCGTTCCAAAGGAGCCAATATGGATGGATTAGTGTATTCAGGTGCAAGAACATTCAGAAGGTGA 966 0.382 MIDDFNDIKKIDMKNISEDDLRKYDFADLDVAHKFYIWYGRSNGFSVRKSNVVSNSKGDILQQTFVCSAQGHGRARRSTRSSKKRQSKLLMRFDCKAMFRVHINVNSGRWYVTIFDDSHNRKLLEEQHCGMLPAYRKRTESDIMQINNFRETNFHTLERSASRHFTRSSFSLFSAVLNKASLMKVIDCEDMDTYHIYIVSKYCSSGSMWNVSFCAEPIQINCSCLRMESIGLPCEHIIVVLVYLDFCELPKCLILDRWTKSVKASIHGTYIDGSCSTSTISLAVKYRLQPILSACSRTNFTRSKGANMDGLVYSGARTFRR. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00355 321 ProSiteProfiles Zinc finger SWIM-type profile. 209 245 IPR007527 GO:0008270
Seca6g00355 321 PANTHER OS01G0519700 PROTEIN 149 265 - -
Seca6g00355 321 Pfam SWIM zinc finger 219 242 IPR007527 GO:0008270
Seca6g00355 321 Pfam FAR1 DNA-binding domain 34 124 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00355 Seca-Chr6 10346589 10348490 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g00355 FAR1 1.9e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00355 - - tpra:123914619 159.073