Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00352 ATGCCGAGCAGCTCACAGGTTATTACATGCAAAGCTGCAATATGTTGGGGGTTAGGGAAGCCTGTGAAGGTGGAAGAGATACAAGTAGGCCCACCAAAAGCAACCGAAGTTCGAGTTAAGATGCTCTGTGCCAGTATTTGCCACACAGACATCTCAAGCACTCAAGGATTAAATGCTAATTTTCCTCTGGCACTTGGACATGAAGGGGTTGGTGTTATAGAGAGTGTTGGTGATCAAGTGAAAAATCTAAAAGAAGGGGATATGATAATTCCAACATACATAGGGGAGTGTCAAGAATGTGAGAATTGTGTTTCAGGAAAAACCAATTTGTGTCTGACATATCCTATAAGAGTGACTGGCCTAATGCCAGATAACACTTCAAGGATGTCTATCCGAGGCCAGAGGCTATTCCATGTCTTAAGTTGTGCTACATGGTCAGAGTACATGGTTACTGATGCTAACTACCTTTTCAAAGTTGATCCAAGCATTGATCCAGCCTATGCTAGTTTCATCTCATGTGGGTTTTCAACTGGTCTTGGAGCTGCTTGGAAGGAAGCCAAGGTTGAAAGTGGATCAAGTGTAGCTGTTTTTGGTCTTGGAGCTGTTGGATTAGGGGCTATATGTGCAGCCAAGATGATGGGAGCAACTAGGATAATTGGAATTGACATAAATGAGATGAAGAGAGGAAAAGGAGAAGCTTTTGGAATGACTGACTTTATAAATCCTGGTGATTCTGTTAAATCTGCTTCACAATTGGTCAAGGAAATGAGTGGTGGAATGGGTGTGGATTATTCCTTTGAGTGCACTGGAGTTGCCCCTTTGCTCACTGAATCTGTGAAAGCCACAAAAGTGGGAACAGGAAAAACAATAGCAGTTGGTGCTGGAACTGAACCTATTGTGCCATTTGGACATTCTGCCATCCTGTGTGGAAGAACTCTGAAAGGCTCTATTTTTGGAGGATTAAAACCAAAATCAGACCTTTCCATTGTAACTAAAAGATGTCAGAATGGGGATTTCCCTCTTGGAGAACTATTCACCCATGAGGTCCCATTGGCAGATATAAACAAAGCATTTGAGCTATTGAAACAACCCAACTGTGTGAAAGTTGTCATCAAGATGTGA 1122 0.4234 MPSSSQVITCKAAICWGLGKPVKVEEIQVGPPKATEVRVKMLCASICHTDISSTQGLNANFPLALGHEGVGVIESVGDQVKNLKEGDMIIPTYIGECQECENCVSGKTNLCLTYPIRVTGLMPDNTSRMSIRGQRLFHVLSCATWSEYMVTDANYLFKVDPSIDPAYASFISCGFSTGLGAAWKEAKVESGSSVAVFGLGAVGLGAICAAKMMGATRIIGIDINEMKRGKGEAFGMTDFINPGDSVKSASQLVKEMSGGMGVDYSFECTGVAPLLTESVKATKVGTGKTIAVGAGTEPIVPFGHSAILCGRTLKGSIFGGLKPKSDLSIVTKRCQNGDFPLGELFTHEVPLADINKAFELLKQPNCVKVVIKM. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00352 373 CDD liver_alcohol_DH_like 8 372 - -
Seca6g00352 373 SUPERFAMILY GroES-like 325 371 IPR011032 -
Seca6g00352 373 Gene3D - 178 316 - -
Seca6g00352 373 FunFam S-(hydroxymethyl)glutathione dehydrogenase 178 316 - -
Seca6g00352 373 Pfam Alcohol dehydrogenase GroES-like domain 35 159 IPR013154 -
Seca6g00352 373 Pfam Zinc-binding dehydrogenase 201 320 IPR013149 -
Seca6g00352 373 SUPERFAMILY GroES-like 4 189 IPR011032 -
Seca6g00352 373 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Seca6g00352 373 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 163 337 IPR036291 -
Seca6g00352 373 Gene3D - 14 368 - -
Seca6g00352 373 PANTHER ALCOHOL DEHYDROGENASE 6 365 - -
Seca6g00352 373 FunFam alcohol dehydrogenase 1-like isoform X1 18 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00352 Seca-Chr6 10229919 10232890 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00352 35 365 Monolignol Biosynthesis Gene Families AT2G21730 25.595 3.34e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00352 K00121 - gmx:100798341 629.787