Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00351 ATGTCGAGCACCTCACAGGTTATTACATGCAAAGCTGCAATATGTTGGGGGTTAGGGAAGCCTGTGACGGTGGAAGAGATACAAGTTGACCCTCCAAAAGCAACAGAAGTTCGAGTTAAGATGCTCTGTGCCAGTGTCTGCCACACAGACCTCTCAAGCATTCAAGGATTCCCACATGCAAATTTTCCTATGGCACTTGGACATGAAGGAGTTGGACTGTATCTACAACTAATTTCATTAATTTGCAGTGTTGTAGAGAGTGTTGGTGATCAAGTGAAAAATCTAAAAGAAGGGGATATGATAATTCCAACATACATAGGGGAGTGTCAAGAATGTGAGAATTGTGTTTCAGGAAAAACCAATTTGTGTCTGACATATCCTATAAGAGTGACTGGCCTAATGCCAGATAGCACTTCAAGGATGTCTATTCGAGGCCAGAGGCTACACCATGTCTTAAGTTGTGCTACATGGTCAGAGTACATGGTTACTGATGCTAACTACCTTCTGAAAGTTGATTCAAGCATTGATCCAGCCCATGCTAGTTTCATCTCATGTGGGTTTTCAACTGGTTTTGGAGCTGCTTGGAAGGAAGCCAAGGTTGAAAGTGGATCAAGTGTAGCTGTTTTTGGTCTTGGGGCTGTTGGATTAGGGGCTATAAGCGGAGCCAAGATGATGGGAGCAACTAGGATAATTGGAATTGATAAAAATGAGATGAAGAGAGAAAAAGGAGAAGCTTTTGGAATGACTGAATTTATAAATCCTGGTGATTCTGTTAAATCTGTTTCACAATTGGTCAAGGATGTGAGTGGTGGAATGGGTGTGGATTATTCCTTTGAGTGCACTGGAGTTGCCCCTTTGCTTACTGAATCCGTGGAAGCCACAAAAGTGGGAACAGGTAAAACAATAGCAATTGGTTCAGGAACTGAACCTATTGTGCCCTTTGGTCTTGCTGCAATTCTATATGGCAGAACTCTGAAAGGTTCTGTTTTTGGAGGGCTAAAAGCCATATCAGACCTTTCCATCGTAGCTAACAAGTGTCAAAAAAAGGAATTTCCTCTTCAAGAACTATTCACCCATGAGGTCCCATTGGAAGATATAAACAAAGCATTTGAGCTATTAAAACAACCCAATTGTGTGAAAGTTGTTATCAAGATGTGA 1158 0.4162 MSSTSQVITCKAAICWGLGKPVTVEEIQVDPPKATEVRVKMLCASVCHTDLSSIQGFPHANFPMALGHEGVGLYLQLISLICSVVESVGDQVKNLKEGDMIIPTYIGECQECENCVSGKTNLCLTYPIRVTGLMPDSTSRMSIRGQRLHHVLSCATWSEYMVTDANYLLKVDSSIDPAHASFISCGFSTGFGAAWKEAKVESGSSVAVFGLGAVGLGAISGAKMMGATRIIGIDKNEMKREKGEAFGMTEFINPGDSVKSVSQLVKDVSGGMGVDYSFECTGVAPLLTESVEATKVGTGKTIAIGSGTEPIVPFGLAAILYGRTLKGSVFGGLKAISDLSIVANKCQKKEFPLQELFTHEVPLEDINKAFELLKQPNCVKVVIKM. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00351 385 Pfam Alcohol dehydrogenase GroES-like domain 35 171 IPR013154 -
Seca6g00351 385 Gene3D - 190 328 - -
Seca6g00351 385 FunFam alcohol dehydrogenase 1-like isoform X1 18 189 - -
Seca6g00351 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 175 346 IPR036291 -
Seca6g00351 385 PANTHER ALCOHOL DEHYDROGENASE 6 377 - -
Seca6g00351 385 Pfam Zinc-binding dehydrogenase 213 332 IPR013149 -
Seca6g00351 385 SUPERFAMILY GroES-like 337 383 IPR011032 -
Seca6g00351 385 SUPERFAMILY GroES-like 4 201 IPR011032 -
Seca6g00351 385 Gene3D - 14 380 - -
Seca6g00351 385 FunFam S-(hydroxymethyl)glutathione dehydrogenase 190 328 - -
Seca6g00351 385 CDD liver_alcohol_DH_like 8 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00351 Seca-Chr6 10212581 10215293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00351 35 377 Monolignol Biosynthesis Gene Families AT2G21730 25.215 1.42e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00351 K00121 - gmx:100798341 672.159