Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00346 ATGAGACTCGAATCAGGGACTTGTAACGTGTGCTCAGCTCCTTGTTCATCTTGCATGCATCTTAACCGAGCTTTCATGGGGTCAAAGGCTGAAGAATACTCTGATGAAAACTGTCGCTCAGGGGAGGCTAATCAGTATTCTACAGATGAGGGTGATGGATCTTCTCTTAGGAGCAGAGCTTGTGAGAGATCGAAGCATGCTGTCAGTGAAACCAGTAATATGCCTAGTGTTTATTCCAGTCATGATGATTCTCTATCTGAAAATGCCGAGAGTAAACAGGCCTTATCAGAAAAGTATCAGGATTCCAAGTGTTTAGAAGGTCTTGATGATAGCACTTCTTGTATCAGTAGAGCCAGCAAAGCTAATTTAGAGAGTGGTAACCATCAAATAAATTCAGACAGAATAAATATATCTTGTAGTTCAGCTTCAGCTAGTCACTTAGGGGCGGAAGGATCTAGAATTGGGCCATCTGTTGACATGTCAGGCTCATCTGAGATTCTCTCTTCTAAAGATGCAGATATTGTGGAAAACTTGTCAGAATGTTGTATGGAAAACGTTGAATCAGCATTGACCAAAGAGGGAGAACCTATTATTGTTACTGGTGAAAAATCTCCTGCAGATAACGATATATCCAAAATACATCCAAAGTCAGAAGCAGATACTGACAATGATGTTGGCGGTGCTAAAGATGAGGATCATAAATATTCAGCCCATGATGGACTGCATGAGAAGGCTGAGGAGCTGGTCAAATCACCTAGCATGCCTGTACCTCAATCAGAAGATGAGAGTGATGAATCAGATGTTGTTGAGCATGATGTAAAAGTATGTGACATCTGTGGAGATTCTGGTCGTGATGATCTACTTGCCTTCTGTTGTAGGTGCAGTGATGGCGCAGAGCACACCTACTGCATGCGGGTAATGCTTGATAAGGTTCCTGAAGGGGACTGGTTATGTGAAGAATGCCAATATGCAGAAGAGACAGCAAATCAAAGGCTGGATGTTGAAGGAAAAAAAAGTCATAAAGTTAGTTCCACTTCGCAAATATCTGGAAAAAGGCCTTCTGAAAGCGTGGAAGTAGCTACAGCATCAAAAAGGCAAGCTCTTGAATCCAGCTCAGGATCACCCAAGGCATCAAGCCCCAAGAGAATAGTTCCACTGTCACGAGAATCTTCATCCAAGAGCTTAGATAATGGAAAAGTTAAACCTGGTCAACAGATCCCCATTCGTAATCGCCCTGGTGGTGATGGCGTAGAACTAGCTCGTTCTCTTTCCACTGGCCCTCGGAGTCAAACTGCAAGGGGTGCGTTGTTGAAGTCTAATTCATTCAACAGCTTCAATTCCAAGCCAAGAGTCAAACATGTTGATGAAGTTGTTCCCCAAAAGCAGAAAGGGGGTGTTGAGCATATTTCTAAGAATATGGAGACACCTGCTGGGATGATAAGCAAATCAATGTCATTCAAATCCTCAAATTTAGGCCGTGCTACTGAATCAAAAGTTAAAATGCTTTCTCCCAAGTCTGTAACTGCTCAGGATTTGAAAGGATCTAGACATGCAAAAGAATCAGGTGTATCTGACAGGAAATTCCTGTCTAGGATTGATCGGCCTGTCATTTGTTCAACCATGGCTAGTTCTGTTGTTTCTCCTAAGGGTGATCAGAAGCTCACACCTCGTGGTGAAACTGCTAAACCTTCAGCAGTTAACAACAATCGAGAGCCTAAGGTCAACCAAGATGGAAAATTAAGTTCATTATCAAAGTCTATGAACAATATAAGCCATAAAAGTCCGGAACCTCAGGTTATTTCAGAGAGAACGTCAACCAGTGTGTATGAAACTAAACAAGATGGGCTGCCTCGAGCACGAGAGACAGCAAATCAGGTTGACAAAACAAAAGATAGTTCTATTGATCGTGTGAGGTCAAGTGTTACTAATGCTTCAAAAAGCTCATTCTGTCATAAATGTAAAGATTTTGGCCACCCTACAGAATGTTGCACAATTGGTGGTACACAGGAATCTGGTGCTGAAGTATCAGTCACTGCCACAATTAGTTCAAAAGTGGAGATGCACACAGGTAATAAATTGAAAGCTGCAATCCAGGCAGCTTTGCTTAGAAGACCTGAACTACACAAGAAGAAAGACGTGCCTGATCAAACTGATGAGTTTCCTACATCAGGCACAGACATGAAATCTGCAGTCAGTTCTCAAGACCAAGTGTTGGTTTCCTACACATCAAAAAATAGTATATCTGCTGAAGAAACCAATGCAAGGCAGGAAATCCTTGAGAATTCTACGTTTGAAACTTGCAAACATTCATCTGGCAATGATTTGAAGCATAACTTTTGTCCAACTGATTTTTCTTTTAAACTTAGAAAGTCAGATTCTGAGGTTCCTGCTTCTGGAAAGCTTGGGGTGAGAGACTTGCCTCATTGTGCTTCGGCAATCTCAAGTGTTATTTCAAAGATGTCAGCCATTCCAGAATATGAATACATCTGGCAGTATGTGATTGCTCTTCCTGTATTAGGGTGTCTTTGA 2529 0.4183 MRLESGTCNVCSAPCSSCMHLNRAFMGSKAEEYSDENCRSGEANQYSTDEGDGSSLRSRACERSKHAVSETSNMPSVYSSHDDSLSENAESKQALSEKYQDSKCLEGLDDSTSCISRASKANLESGNHQINSDRINISCSSASASHLGAEGSRIGPSVDMSGSSEILSSKDADIVENLSECCMENVESALTKEGEPIIVTGEKSPADNDISKIHPKSEADTDNDVGGAKDEDHKYSAHDGLHEKAEELVKSPSMPVPQSEDESDESDVVEHDVKVCDICGDSGRDDLLAFCCRCSDGAEHTYCMRVMLDKVPEGDWLCEECQYAEETANQRLDVEGKKSHKVSSTSQISGKRPSESVEVATASKRQALESSSGSPKASSPKRIVPLSRESSSKSLDNGKVKPGQQIPIRNRPGGDGVELARSLSTGPRSQTARGALLKSNSFNSFNSKPRVKHVDEVVPQKQKGGVEHISKNMETPAGMISKSMSFKSSNLGRATESKVKMLSPKSVTAQDLKGSRHAKESGVSDRKFLSRIDRPVICSTMASSVVSPKGDQKLTPRGETAKPSAVNNNREPKVNQDGKLSSLSKSMNNISHKSPEPQVISERTSTSVYETKQDGLPRARETANQVDKTKDSSIDRVRSSVTNASKSSFCHKCKDFGHPTECCTIGGTQESGAEVSVTATISSKVEMHTGNKLKAAIQAALLRRPELHKKKDVPDQTDEFPTSGTDMKSAVSSQDQVLVSYTSKNSISAEETNARQEILENSTFETCKHSSGNDLKHNFCPTDFSFKLRKSDSEVPASGKLGVRDLPHCASAISSVISKMSAIPEYEYIWQYVIALPVLGCL. 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00346 842 MobiDBLite consensus disorder prediction 39 54 - -
Seca6g00346 842 MobiDBLite consensus disorder prediction 333 417 - -
Seca6g00346 842 MobiDBLite consensus disorder prediction 201 239 - -
Seca6g00346 842 MobiDBLite consensus disorder prediction 67 92 - -
Seca6g00346 842 MobiDBLite consensus disorder prediction 64 92 - -
Seca6g00346 842 SMART PHD_3 275 322 IPR001965 -
Seca6g00346 842 MobiDBLite consensus disorder prediction 207 239 - -
Seca6g00346 842 MobiDBLite consensus disorder prediction 38 57 - -
Seca6g00346 842 MobiDBLite consensus disorder prediction 502 525 - -
Seca6g00346 842 MobiDBLite consensus disorder prediction 707 731 - -
Seca6g00346 842 SUPERFAMILY FYVE/PHD zinc finger 262 326 IPR011011 -
Seca6g00346 842 PANTHER - 273 831 - -
Seca6g00346 842 MobiDBLite consensus disorder prediction 614 635 - -
Seca6g00346 842 MobiDBLite consensus disorder prediction 341 399 - -
Seca6g00346 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 335 IPR013083 -
Seca6g00346 842 MobiDBLite consensus disorder prediction 248 267 - -
Seca6g00346 842 MobiDBLite consensus disorder prediction 561 612 - -
Seca6g00346 842 MobiDBLite consensus disorder prediction 543 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00346 Seca-Chr6 10107795 10117077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00346 272 333 C2H2 Transcription Factor Family AT3G01460 37.097 3.12e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00346 - - gmx:100784908 1157.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00346 6 10107795 10117077 Seca6g00346 6 10107795 10117077 ECH