Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00340 ATGATGATGGGTTTCAGTAATAGTTGTTATAGCAGGTCACCTTTCACAGTGTCTCAGTGGCAGGAACTGGAGCACCAAGCTTTGATCTTCAAGTACATGGTTGCAGGTCTTCCTGTTCCTCCTGATCTTGTGCTTCCCATTCAGAAGAGCTTTGAGTCTATTTCACAAACCTTCTTTCAACATCCCACTTTTGCAGTGAGTTATTGTTCCTTTTATGGGAAGAAGGTGGACCCAGAGCCAGGACGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATATCCAGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCCCAAACTATGACACAGTCATCATCCACTGTGACATCACTGACTGTCACTGGTGGCAGCAGTAGAACTGGAAACTTCCAGAACCTTCCCACAAATGCCTTCGGTAATCTCCAAGGTACTGGTTCTGGAACTGACCGTACCGATTATCATCTAGATTCCATTCCCTATGGAATTCCAAGTAAAGAATACAGGTATCTTCAAGGGCTTAAATCTGAGGGTGGAGAACATAGCTTCTTTTCTGAAGCTTCAGGAAGCAATAAGGTTCTCCAGATGGAGTCACAGCTGGAAAACACATGGCCTTTAATGTCAACTAGAGTTGCCTCTTTTTCTGCATCAAAATCAAGTAATGATTCCATGTTGCAGAGTGATTATCCCCAGCATTCATTTTTATCTAGTGACTATGCATCAGGGGAAGCTATGAAGGAGGAAGGCCAGCCTCTTCGACCTTTTTTCAATGAATGGCCTAAAGGAAGGGATTCATGGTCTGGTCTGGAAGATGAGAGATCCAACCAAACAGCCTTCTCCACAACTCAGCTCTCAATATCCATTCCAATGTCATCTTCTGACTTCTCTGCAACAAGCTCTCAATCCCCACATGGTGAGATTTAA 969 0.451 MMMGFSNSCYSRSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFESISQTFFQHPTFAVSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSSSTVTSLTVTGGSSRTGNFQNLPTNAFGNLQGTGSGTDRTDYHLDSIPYGIPSKEYRYLQGLKSEGGEHSFFSEASGSNKVLQMESQLENTWPLMSTRVASFSASKSSNDSMLQSDYPQHSFLSSDYASGEAMKEEGQPLRPFFNEWPKGRDSWSGLEDERSNQTAFSTTQLSISIPMSSSDFSATSSQSPHGEI. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00340 322 PANTHER GROWTH-REGULATING FACTOR 5 13 309 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca6g00340 322 MobiDBLite consensus disorder prediction 268 300 - -
Seca6g00340 322 Pfam QLQ 14 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca6g00340 322 MobiDBLite consensus disorder prediction 286 300 - -
Seca6g00340 322 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Seca6g00340 322 MobiDBLite consensus disorder prediction 118 167 - -
Seca6g00340 322 ProSiteProfiles QLQ domain profile. 14 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca6g00340 322 Pfam WRC 78 120 IPR014977 -
Seca6g00340 322 SMART QLQ_2 13 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca6g00340 322 MobiDBLite consensus disorder prediction 109 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00340 Seca-Chr6 9998896 10002337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00340 2 120 GRF Transcription Factor Family AT3G13960 58.678 7.63e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca6g00340 WRC 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00340 - - gmx:100787226 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00340 6 9998896 10002337 Seca6g00340 6 9998896 10002337 ECH