Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00337 ATGGCCCCTTCTTCTCTGAGCATTGCTGATTCACAGTCTCCGTCAACAGCACCCGAAGTTGCAGAGAGCGATCTTCAGCCATTTTTTGTTCTTCATAAAGCTTCATCCCGAAGAAAAGATAGAACATCAACAGAAAAGGGAAAATTGCGCAAGAGAGATGAGCTATCTTCATCATCACCACCACAAAGTGCAAAGAAACTGGCAGGACGTACAACTGAAGAGTGTGATTGTCATTTGTTTCAGCAACTAAAGATTGAAACTTTTGAAATTGTTTGGACAAAGATTGAATCTACCATTAAGGACGTTTTGAGAGATCTCAATGCTAGTGTATTTAATGATATACAACAATGGGTTCTGGAGTGCTTCAATGCTACAAGATTGCTTGGAGAACCAAGTATTGCTGAAGCAACTAGGTCTTTTCCTGTTCTAAATGACACTACTCCTGGGCAGCTGTTTACTGCATTGGTCATTACCAGAAACATGGAGTTTGTTGATGATATATGGACATTTGAAGAGCTTGGAGATTACTTGAAATCCCATGGATGCCACGTGGCTATGCTTTCATCACCGGAGTTTTCATTAAAAAATGGAATTGCTGGTTGCCTGAAAGCCTTATTGCGAGAGCTTCTAGGGGGTGCTATCGACTCAGCTGATATATCAATCTTGGCATCATGGTATAGAGAACAAGACAACTACAATAAACCACTAGTGCTGATCATTAATGATTTGGAAAGATGTTGCGGATCAGTCTTAACCGATTTTATCCTGATGTTGAGTGAATGGGTTGTCAAGGTGCCAATCATCTTAATATTTGGAGTTGCAACGACAATGGACACCCCAAGAAACATTTTGCCGTCATATGCTCTCGGGCATTTGTGTCCTTCTATGTTTATGCTTCGAACGCCAGCTGAGAGAATGGATGCAATTGTTGAGGCTGTTCTTGTGAAACATTGCACTACATTTAGTATTGGTCATAAAGTGGCACTCTTCCTCAGAAACTACTTCATCAACCAGGATGGGACAGTAACATCTTTTATAAGAGCTTTGAAGGTTACTATTGCAGTTTTTGGGTTACTGACTTTTTATGTGTATCATCATTTCATGAGTTACATACACAGTGACAGGATATATGACTGTCTTTTACGTGTCATATTTTCTGATTATATCTTTAAGGTAGCATGCTTACTATATTTCTCTATGGAACCTCTGAGTCTCATACATGGGCAAATACTCGCTGAAGATCAAAAGGAGGGAAAATCTACATTATCACCTGAGACTATGTTGAAATACATGGATGAACTTCCATTCTATGCAAGGAATCAAATGGTTGATCAGACCAGAAAGAGCATGGCAGAGGGTTTGTCAGAATTGGTGACAGTGCAGAAGCTATGGAGCACTGTGGTTCTCTGCCTATATGAAGCTGGAAAGTATAGTAGAGTGCGACTGCTGGATTTGTTCTGTGAAGCACTCGATCAAGATTTGTACCCATCTAGGGATTCTGGTTATCATGTGGGGGATGAAAAAGATCATGGGTTGTCCATGACAAATGATCCCTGTCAACAATATTCCATCATGCAAAGCGGCGGTTTTGTTTGCCAGATAGTACGCAAAGTGAGGGATCTCCCTACAGGAATGCTATATCAGTTGATTGAGAGCTGGGAAAAACTTATTGCAGATATTCCAGAGATTCATCAGAAACTGGAAATGTTGCAATCTTCAGTAAGATGTGAAGATGGAAAGAGTTCACGCAAGAGTTCCAAGGACATTTCCAAGAGATATTCGTCCAGGGTTTCAGTAAACATTGACAAGGACTCGAGAGGGTTAAACTCACAAGCTATCACATTTCTTGATTGTTTGGTTAGAAATTTTTTGAAGCCCATTGAAGGAATGCCTTTCCATGAAATTTTCTGCTTCAAGAATGTTGAGAAGCTTCAATTGGTTTTGATTGGAGATCCAAGAAGAAGGATTCAAGTTGATCTCTTGGAGTTCCATAAGATTTTAAGGTGCACTTGCTGTAACAAGAGTGGCAATGCCCTATTGCCATCCAGACATGATTCCTCAATTATGTATTCCCTGGCTCAAGAACATGGAGATCTTATCAATCTTCATGACTGGTTCCAATCTTTTAGAACCATTGTTCTTCAACATACAAATAAACGGAAACAAAAATCAAAGCAGCCCCCGTTACCAAAGAAGAGAAAAGACATGAATGGATCTGGAGACCAAAATGAAGCATCAATTCAAGCACGCTTTTGCAAGGCAGTAACAGAGCTACAGATCACAGGGCTAGTTAGAATGCCCAGCAAGAGACGCCCAGATTTTGTACAAAGAGTTGCATTTGGACTTTGA 2349 0.4027 MAPSSLSIADSQSPSTAPEVAESDLQPFFVLHKASSRRKDRTSTEKGKLRKRDELSSSSPPQSAKKLAGRTTEECDCHLFQQLKIETFEIVWTKIESTIKDVLRDLNASVFNDIQQWVLECFNATRLLGEPSIAEATRSFPVLNDTTPGQLFTALVITRNMEFVDDIWTFEELGDYLKSHGCHVAMLSSPEFSLKNGIAGCLKALLRELLGGAIDSADISILASWYREQDNYNKPLVLIINDLERCCGSVLTDFILMLSEWVVKVPIILIFGVATTMDTPRNILPSYALGHLCPSMFMLRTPAERMDAIVEAVLVKHCTTFSIGHKVALFLRNYFINQDGTVTSFIRALKVTIAVFGLLTFYVYHHFMSYIHSDRIYDCLLRVIFSDYIFKVACLLYFSMEPLSLIHGQILAEDQKEGKSTLSPETMLKYMDELPFYARNQMVDQTRKSMAEGLSELVTVQKLWSTVVLCLYEAGKYSRVRLLDLFCEALDQDLYPSRDSGYHVGDEKDHGLSMTNDPCQQYSIMQSGGFVCQIVRKVRDLPTGMLYQLIESWEKLIADIPEIHQKLEMLQSSVRCEDGKSSRKSSKDISKRYSSRVSVNIDKDSRGLNSQAITFLDCLVRNFLKPIEGMPFHEIFCFKNVEKLQLVLIGDPRRRIQVDLLEFHKILRCTCCNKSGNALLPSRHDSSIMYSLAQEHGDLINLHDWFQSFRTIVLQHTNKRKQKSKQPPLPKKRKDMNGSGDQNEASIQARFCKAVTELQITGLVRMPSKRRPDFVQRVAFGL. 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00337 782 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 3 390 781 IPR020795 GO:0003677|GO:0005664|GO:0006260
Seca6g00337 782 MobiDBLite consensus disorder prediction 1 69 - -
Seca6g00337 782 MobiDBLite consensus disorder prediction 717 742 - -
Seca6g00337 782 Pfam Origin recognition complex winged helix C-terminal 653 780 IPR040855 -
Seca6g00337 782 MobiDBLite consensus disorder prediction 1 20 - -
Seca6g00337 782 CDD Orc3 631 780 - -
Seca6g00337 782 CDD Orc3 86 369 - -
Seca6g00337 782 Pfam Origin recognition complex (ORC) subunit 3 N-terminus 232 352 IPR045667 -
Seca6g00337 782 Pfam Origin recognition complex (ORC) subunit 3 N-terminus 81 210 IPR045667 -
Seca6g00337 782 MobiDBLite consensus disorder prediction 33 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00337 Seca-Chr6 9857982 9872249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00337 1 714 Core DNA Replication Machinery Family AT5G16690 43.154 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00337 K02605 - gmx:100780646 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00337 6 9857982 9872249 Seca6g00337 6 9857982 9872249 ECH