Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00334 ATGTCTCCTTTTGCGAGAAGTGTTCCCCTGCTTTCGTTGCATATAATATTGCTTTCAGCCAGCGATATTGCTCTTGGAAAAACACATGTGCAGGTCGTAAATCATTTGACGGGCAATTTGGACTTAACCTTTCACTGCAAATCTAAGGATGACGATCTTGGAGTCCAACTTCTCCATCCTAGTGAGTCATGGGAATTTAGTTTTAACCCTGCCAAATTCATTTGGACCACACAGTTCTATTATCTCTTTCAATGGCAAGATAATGTTGGAGTCCAACAGAAATGGTTTGATATATACATAGAAAATAGGGATTATTGCATAATTTGTACTTGGTTTATAAGCCAAGATAGACCATGTAAGCAGATTTCAGAAAAGGTGTCTGAATGCATTGCATGGATTAACTAA 405 0.3802 MSPFARSVPLLSLHIILLSASDIALGKTHVQVVNHLTGNLDLTFHCKSKDDDLGVQLLHPSESWEFSFNPAKFIWTTQFYYLFQWQDNVGVQQKWFDIYIENRDYCIICTWFISQDRPCKQISEKVSECIAWIN. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00334 134 Pfam Plant self-incompatibility protein S1 29 132 IPR010264 -
Seca6g00334 134 PANTHER - 26 121 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00334 Seca-Chr6 9166130 9166534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00334 27 132 Carbohydrate Esterase AT3G16970 37.719 1.55e-17 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00334 - - lja:Lj3g3v2995840.1 108.612