Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00300 ATGGCTGCTGTTGGAGGACCAATTGACATGGTGAGGAACATATGTGGGGTGAAAGATTCATGGAGGTTGAAAGTGAGGGTTGTCCGATTATGGAAGAGTTCATCCAAGAATGATCCACAAAAAGTTTTTTCTCTTGAGATGGTTTTGGTGGATGCTGAGGGTGGAAGGATACAGGCAAGCATCCGTAAGCCAATGATGAGGAAATTTTTTAATGTTATTGTTGAGGAAGAGGTTTACAAGATGATTTACTTTGCTGTTGTGAAGAACGTGGGTAACTTTAGGGCCACCAGACATGAATTCAAGTTGATTTTCAATAGTAGGATAGCTGTCTTCCGGGCTGAAAGCCAACTTATTCCAGAGTATGGGTTGTCATTGTCTTCATCTGAGGACATAAGGAATACGAAAGGGGAATCTGAATTTCTGCATGACATGATTGGTTTACTCACTGCTGTATCTGCTGAGAAGAATATTGTCAAGGATGGGAAAACAACCCGATTGATTATGCTGGAGCTTACCGATGATAAGGGTAAGATAAGGCGCACCCTGTTTGGTGACTTTGTAGATAAAGTTAATGAATACCTTTCAATGAGTGGTACCGAGTTAACTTTGGTTGTGATTCAATTTGCTAGAGTTAACACCTACAAGGGTGATGTTGGGTTGGTCAATGTTTTCAATACTTCAAGGTTGTTGTGGAATCCTCAAATAGTTGAAGCAATTGAATTTAGAGAAAGTGTTGCTTGTCATGAGGTGGATTCTGATATTGCTATTGGGTTTCTTGATGATGATATCCAATCTTTGTCCATGAAAGATGAGTTTTTGAATTCATTCCCTAGGAAGAATCTCGAAGAGTTACAATCATGTGAAGAGGATGGTTTCTTCATTGTCCTGGGTACTATTTTATCTATTATTGATGATCATTGGTGGTATTCAGCCTGTAGTTGCAATAGGTATAAGCTGAAATTGTTGGTCTCTGACCGCTTCGAAACTGCAATTTTAATTCTCTTTGGTAGTCATCGTCGTTCCCTGTTTAATAAGTCATGTGAGGAGATGTTAGCAATTGTAAAGGTTGGAACTTCACCCTCTTATCCTGATGAGTTGAAAGAAATTGTGGGGAAGGAAATACTGTTTAAGGTTGAAAAGAATGCAGACTATGCTTCTGTTTATGATGATGATGCCTATAAGGTGAAAAAAATATGTGATGATACTGAAATCATTGAAGAATTTAAGACTGATGCCTCCATTGTGACACCACAAAAGCTCAAGTTTGTGCCCAAGTTTAGTGACATATGTTCCCAGAATGTGACTTCTGAAGTGTCAAAATGTCTGGATGAGGAATTCACTAATCTCACACAACCTGAATTTTCGTCATTTGAGAAGGGGGCTCTTCTTCTTTGGGTGAAAAACAATCTCATTCAAGTTTCTACTATTTCGTTGGTTGAACCTTCAGAACTTGCTGTTAATGATAACCTAGATGGAAAGAAAGAAGTGGATAATTCCAATATAGTTTCTGCTGTGAAGAAGAGAAAGCTGAGGATGAAAACTGTTAAGATAGAGAAGGATTAA 1563 0.3852 MAAVGGPIDMVRNICGVKDSWRLKVRVVRLWKSSSKNDPQKVFSLEMVLVDAEGGRIQASIRKPMMRKFFNVIVEEEVYKMIYFAVVKNVGNFRATRHEFKLIFNSRIAVFRAESQLIPEYGLSLSSSEDIRNTKGESEFLHDMIGLLTAVSAEKNIVKDGKTTRLIMLELTDDKGKIRRTLFGDFVDKVNEYLSMSGTELTLVVIQFARVNTYKGDVGLVNVFNTSRLLWNPQIVEAIEFRESVACHEVDSDIAIGFLDDDIQSLSMKDEFLNSFPRKNLEELQSCEEDGFFIVLGTILSIIDDHWWYSACSCNRYKLKLLVSDRFETAILILFGSHRRSLFNKSCEEMLAIVKVGTSPSYPDELKEIVGKEILFKVEKNADYASVYDDDAYKVKKICDDTEIIEEFKTDASIVTPQKLKFVPKFSDICSQNVTSEVSKCLDEEFTNLTQPEFSSFEKGALLLWVKNNLIQVSTISLVEPSELAVNDNLDGKKEVDNSNIVSAVKKRKLRMKTVKIEKD. 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00300 520 Gene3D - 7 114 IPR012340 -
Seca6g00300 520 Gene3D - 267 315 IPR012340 -
Seca6g00300 520 Gene3D - 316 407 IPR012340 -
Seca6g00300 520 CDD RPA1_DBD_A_like 22 106 - -
Seca6g00300 520 CDD RPA1_DBD_B_like 143 245 - -
Seca6g00300 520 Gene3D - 118 252 IPR012340 -
Seca6g00300 520 SUPERFAMILY Nucleic acid-binding proteins 12 110 IPR012340 -
Seca6g00300 520 SUPERFAMILY Nucleic acid-binding proteins 129 246 IPR012340 -
Seca6g00300 520 SUPERFAMILY Nucleic acid-binding proteins 277 398 IPR012340 -
Seca6g00300 520 Pfam Domain of unknown function DUF223 46 113 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00300 Seca-Chr6 7771261 7774730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00300 21 312 Core DNA Replication Machinery Family AT4G19130 24.272 1.38e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00300 - - lja:Lj6g3v0884310.1 347.436