LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g00276	ATGTCACAAATGGCTCCATCTTCTGTCACTGTTACTGCTCGCTTTCATGAATCCATCACCCGAAATGCGCTTCGCTCCTATCTCGCAGAGTTTATCTCTACTTTCTTCTATGTCATTGTCGTCGTTGGCTCTGGAATGTCCTCAAGGAAGTTGATGCCTGATGCTTCAGTGAATCCAACAAGTTTGCTTGTGGCTGCCATTGCAAATGCTTTTGCATTGTCCTCTGTTCTGTATATAGCATGGGACATCTCTGGTGGACATGTCAATCCGGCTGTGACCTTTGCAATGGCAGTGGGAGGTCACATTAGTGTCCCAACTGCTCTCTTTTATTGGGCTGCTCAATTGATTGCCTCTGTTATGGCTTGCCTTGTTCTCAGGGTCATTGTTGTTGGAATGCATGTGCCAACATACACAATTGCAGAAGAGATGACAGGGTTTGGAGCATCAGTGTTAGAGGGTATATTGACATTTGTTTTGGTGTATAGTGTATATGCAGCAAGGGACCCAAGGCGTGGTGCATTGAGTGCCACAGGGACACTTGTGGTTGGTTTAATAGCTGGGGCTAATGTGTTGGCTTCAGGACCATTCTCTGGAGGGTCAATGAATCCTGCTTGTGCTTTTGGCTCAGCAGCAATTGCAGGCACTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATTGGTGCTGCCATTGCTGGCCTTCTTTATGACAATGTGGTGTTCCCTCTTCAACCCTCACATTCAATTTCAGAAATTGGGGTCTAA	768	0.4648	MSQMAPSSVTVTARFHESITRNALRSYLAEFISTFFYVIVVVGSGMSSRKLMPDASVNPTSLLVAAIANAFALSSVLYIAWDISGGHVNPAVTFAMAVGGHISVPTALFYWAAQLIASVMACLVLRVIVVGMHVPTYTIAEEMTGFGASVLEGILTFVLVYSVYAARDPRRGALSATGTLVVGLIAGANVLASGPFSGGSMNPACAFGSAAIAGTFRNQAVYWVGPLIGAAIAGLLYDNVVFPLQPSHSISEIGV.	256

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g00276	255	Pfam	Major intrinsic protein	21	237	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca6g00276	255	PANTHER	AQUAPORIN-8	15	243	IPR034294	-
	Seca6g00276	255	PRINTS	Major intrinsic protein family signature	69	93	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca6g00276	255	PRINTS	Major intrinsic protein family signature	151	169	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca6g00276	255	PRINTS	Major intrinsic protein family signature	25	44	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca6g00276	255	PRINTS	Major intrinsic protein family signature	183	205	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca6g00276	255	PRINTS	Major intrinsic protein family signature	220	240	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca6g00276	255	PRINTS	Major intrinsic protein family signature	106	125	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca6g00276	255	ProSitePatterns	MIP family signature.	87	95	IPR022357	-
	Seca6g00276	255	FunFam	Probable aquaporin TIP5-1	9	249	-	-
	Seca6g00276	255	SUPERFAMILY	Aquaporin-like	15	247	IPR023271	-
	Seca6g00276	255	Gene3D	Glycerol uptake facilitator protein.	8	249	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g00276	Seca-Chr6	6923722	6925477	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g00276	1	251	Major Intrinsic Protein MIP	AT3G47440	64.143	3.25e-114	326

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g00276	K09873		-	gmx:100801448	438.343

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca6g00276	6	6923722	6925477	Seca6g00276	6	6923722	6925477	ECH