Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00274 ATGGACTTGCAAGAAATGCGCATGAAACTAATCTATCATCTCAAGGACTGTGCCCTGTTCACTGAATCACGTGACTTCATCAATGCAGATAATAGATTGTACCATATTTCTCACCTTGCCTCCCCTCATGGTGATTCAATACAACGTGTAGCCACTTATTTCAATGAGGCACTTGCTTGTTGCCATGTGCTCAAGATGTTGCGTGGTGTACCCAAAGTCCTGCATTTGTCAAAGAAATCATCAACAGCAGAGAAACTACATGTCAAGGAATTATTCTTTAGGTTATATCCATTCTTGAAGATTGCATACAAGACCATGAATCAGACCATTATTGAAGCCATGGAACAAGAAAAAGAGATTAATATCCTTGATCTCAGTGCACCTCATGATGCCACTCAATGGATTTATCTTATGCAGAGCTTAAAAGAACATTTACCAAACCCACCACCACCATATCTGAAAATTACAATTACATGTATACATGTGAAGAAGGAGGTGTTGGATCAGATGGGGTTACATTTAAGAATAGAAGCTGAAAGGCTGAATTTCCCTAATTTCCAATTCCATCCTGTTGTGAGCACTTTGGAGAACCTTGACCTTGAAACATTGCCTGTAAAGAAGGGAGGGCCACTTGCAATTAGTTGTGTGTTTCAACTTCACTCTCTTCTGGCAACTGATGAGGTAAATCTCCAAATGAGGAACTCTTACTCACCTGCAGCATCAATGAATCAATATGTACAAATGCTTGGGAAACAGAAGATGATCAATCCAAGTCCTGACTCAGCATTGTTTCCTTTTTCTCTGAGTCCACCTAAGATGGAGTGTTTGCTAAATGTCTTGTGGAAGCTCAATCCTAAAGTGATGATGATTACTGAGCAAGAAGCCAATGTTAATGGGTCTACTTTGACAAAGAGGATGGACAAAGCTTTGCACTTTTATGGCTCATTATTTGATTGCTTGGAATCTTCCTTTTCAAGAACATCAGTAGATAGAACCTTATTGGAGAAGATGTTACTTGGGGAGCAAATAAAGAACATTGTTGCATGTGAAGGAGTTGAGAGAAAGGAGAGGTATGAGAAACTTAAAACATGGATACCAAGGCTTCAATTGGCTGGATTTGGAATGGTACCTGTTAGCTCCAGTGGGATACAACAAGCAAAAAACCTGTTGCAAAGCTATGTACATGGATATCATATTCTTCAGGACAATCAATGCTTGTTTATCTGTTGGAAAGGTAAGCCTCTCTTTTCTGTATCAGCCTGGAGAAGGTGTTAG 1275 0.3961 MDLQEMRMKLIYHLKDCALFTESRDFINADNRLYHISHLASPHGDSIQRVATYFNEALACCHVLKMLRGVPKVLHLSKKSSTAEKLHVKELFFRLYPFLKIAYKTMNQTIIEAMEQEKEINILDLSAPHDATQWIYLMQSLKEHLPNPPPPYLKITITCIHVKKEVLDQMGLHLRIEAERLNFPNFQFHPVVSTLENLDLETLPVKKGGPLAISCVFQLHSLLATDEVNLQMRNSYSPAASMNQYVQMLGKQKMINPSPDSALFPFSLSPPKMECLLNVLWKLNPKVMMITEQEANVNGSTLTKRMDKALHFYGSLFDCLESSFSRTSVDRTLLEKMLLGEQIKNIVACEGVERKERYEKLKTWIPRLQLAGFGMVPVSSSGIQQAKNLLQSYVHGYHILQDNQCLFICWKGKPLFSVSAWRRC. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00274 424 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 418 IPR005202 -
Seca6g00274 424 ProSiteProfiles GRAS family profile. 1 422 IPR005202 -
Seca6g00274 424 Pfam GRAS domain family 13 422 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00274 Seca-Chr6 6889466 6890740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00274 4 422 GRAS Transcription Factor Family AT1G50420 43.964 2.63e-114 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca6g00274 GRAS 9.4e-97 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00274 - - vra:106778126 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00274 6 6889466 6890740 Seca6g00274 6 6889466 6890740 ECH