Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00272 ATGGAGTATATACCCTTATTGGCAAGTCAATTGGGGGTTGGGTTTTTTGACAAGCTTGGTTCTCTTTCCATGCAGCGGTTACAGGACAAGGTTCATTCAATCTGTGAGGCAGCTGCTAACAACTTGAAGCGACTAGCAAAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTACACAGTGTGGTATGGTAATCTATATATACAACATAAATTGTATATGCTATGGTGCAGTTGAAGTCAGCACACCTGCCAAAGAGCTTGAGGGTACTAGTCGGCCAGCTCATTATCATGTTCTATGGGATGAAAGCAACTTCACAGCTGATGGAATTCAGTCTTTGACAAACAATCTTTGTTATACATATGCCAGGTGTACTCGTTCTGTATCTGTTGAGGCAGTGAGTGAAAGGAGGGTAAGAGTGAATCATGCAGTGAGTGAGTCAGGGAGTGAATGTGGATGTAGGGTCAGGCTCACATCATCCCTTCTTGCTGTTGCAGTACAGCTCCGTAGGACAGAATCTCTTAACAAGCACACGAGGATGGTTCTCTTCCTGTTGTTCATAATCATAATGGAATAG 579 0.4335 MEYIPLLASQLGVGFFDKLGSLSMQRLQDKVHSICEAAANNLKRLAKEFGPEWAMQHIITQCGMVIYIYNINCICYGAVEVSTPAKELEGTSRPAHYHVLWDESNFTADGIQSLTNNLCYTYARCTRSVSVEAVSERRVRVNHAVSESGSECGCRVRLTSSLLAVAVQLRRTESLNKHTRMVLFLLFIIIME. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00272 192 ProSiteProfiles Piwi domain profile. 90 133 IPR003165 GO:0003676
Seca6g00272 192 Gene3D - 81 150 IPR036397 GO:0003676
Seca6g00272 192 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 87 133 - -
Seca6g00272 192 Pfam Piwi domain 87 134 IPR003165 GO:0003676
Seca6g00272 192 SUPERFAMILY Ribonuclease H-like 88 131 IPR012337 -
Seca6g00272 192 Gene3D - 1 80 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00272 Seca-Chr6 6858710 6863256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00272 88 131 Eukaryotic Initiation Factors Gene Family AT5G43810 90.909 8.58e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00272 K03456 - gmx:100796862 104.76