Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00265 ATGGAAACAACTAAAAACAACCTCCCCCCTCCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAAACTAAAGTAAACAGAGTCCCAACGAAAAGGAAGGTGACTAAAAAGAAGGTGTCACTAAAACTGATTGAGAATTTGAAAGTAAGAAAATGTTGTTACAAAAAAAGAACTGTAGGGTTGTTAAGGAAGATAAAGGATCTTTCCATACTTTGTGGTATCCCTGCATGCTCAGTCATCTCTGGTCCAGGTGATACTAAGCCTAAAATATGGCCATCCCCTAAAGTGGCTAAACAACTACTACAGAGGCTTGAGGAAGTTCCAAAGGGTGTTAAGTCCAGAAAAGTGGTTACCCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAACTTGCGAGGCTCAAGGAGAGGAACAATGAGAAATATATGTCAGTTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTAGAGCCTAGTGATTTGAAGTGTTTACTTGGTTATGTGGAGCAAAAATTGAACAAAGTTAGAATGAGAACCAAACATTTTAAGCAGGTGTTGCCTCCTAATCCTCCTCCTCCACCACTAGTGTCTTGTCCTCAAGAGAATGAGGTCCTAAAGAAACAATCATCCTTAGATTTGGGGAAAGATATTGATCTGGTTAATAGTGGTTTTAATAATGATAATAATGTGGGTAGTAGCAGCATGGGGCTACCACCACCACATGCAAATCTTAGTGATGTTCATATGGTGTTTCCCCAAGAGAATTTTGGAGGTTTCAATAATGTAAGTGATTTAGGGGTGTTTCCTCCAAGCAATTTTGGAGATCTCATTGGTGAAAGTGACCTAGGTTCAGAGGTGTTCTCTCTTAGTTATTTTGGAGGCCTTATTGGTGAGAGTGACTCAAGGTTAGGGGCATTTCCTCTAGAGAATTTTGGAAATCTCAATGATGAAAGTGATCACTTGGGGTCAAAGGTGTTGCCTCCTCAAGGCAATTTTGAAGGTGTAAATGGTGAAAATGACTTGTGGTTGTTACCTCAAGGCAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGAAATTATGAAGGTCTCAATGTTGGAAGTGACTTAGGGGTGTTACCTCAAGGCAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGCATTTATGAAGGTCTCAATGTTGGAAGTGACTCAGGGGTGTTACCTCAAGTCAATTTTGGAGATCTCAATGGTGAAAGTGATGAAGGCAATTGTGAAGGTCTCGATGTTGGAAGTGACTCAGGAATGTTACCTCAAGACAATTTTGGAGGTCTCAATGGTGAAAGTGATTTAGGAATGTTGCTTGAAGACAATTTTGAAGGTCTCAATGGTGAAAGGGGTGATAGTTCACATGTGTGGCCTGAAGGAAATTTTGGAGATCTCAATGATGGAAGTGATCGCTTAAAGATGTATCTTGAAGGTAATTTTGAAGGTCTCAATGGTGAAAATAATTCAGGGATTCTGAATGGAATCTCTACTGATGAAATTGGAGGCAGTAACATATGGCCATCTTATGGACATTTTGAAAGTTCAATTGGTGGAAGTTACAAGGAAATAGAACAGCATAATGAAAATCAAGGATGGGCCATTAACAACACAGGGCTACCACCACCACATGCAAATCTTAGTGATGTTGATATGGTGTTTCCCCAAGAGAATTTTGGAGGTTTCAATAATGTAAGTGATTTAGAGGTGTTTCCTCCAAGCAATTTTGGAGATCTCATTGGTGAAAGTGACCTAGGGTCAGAGGTGTTCTCTTTTAGTGATTTTGGAGGCCTCATTGGTGAGAGTGACTCAGGGTTAGGGGCATTTCCTCTAGAGAATTTTGGAAATCTTAATAATGAAAGTGATCACTTGGGGTCAAAGGTGTTGCTTCCTCAAGGTAATTTTGAAGGTGTAAATGGTGAAAATGACTTGTGGTTGTTACCTCAAGGCAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGCAATTATGAAGCTCTCAATGTTGGAAGTGACTCAGGGGTGTTACCTCAAGGAAATTTTGGAGGTCTCAATAGTCAAAGTGATGAAGGCAATTATGAAGGTCTCAATGTTGGAAGTGACTCAGGAATGTTACCTCAAGACAATTTTGGAGGTTTCAATGGTGAAAGTGATTTAGGAATGTTGCTTGAAGACAATTTTGAAGGTCTCAATGGCGAAAGGGGTGATAGTTCACAGGTGTGGCCTGAAGGAAATTTTGGAGATCTCAATGATGGAAGTGATCCCTTAAAGATGTACCTTGAAGGTAATTTTGAAGGTCTCAGTGGTGAAAATAATTCAGGGATTTTGAATGGAAGCTCTACTAATGAAATTGGAGGCCGTAACATATGGCCATCTTATGGACATTTTGAAAGTTCAATTGGTGGAAGTTACATGGAAATAGAGCAGCATAATGAAAATCAAGGATGGGCCATTGACAACACAGGGCTTATTCGTGGTTATCAAAACAACTCTGGAGCCAACACTATTGAAGTTGCTATGGGGAGATTCGATGCAAACATTGTTGGCAATTACAATGGAAATAACTTGAATTCTGGATTGCCTACTCATGGAAATTTTGTTAGTTGTGGTGAATTTGGAAGTGATGCTCAAGTGCCTACATTTGGAGGAAATGTTCCTTGA 2715 0.3985 METTKNNLPPPPPPPPPPPPPPPQTKVNRVPTKRKVTKKKVSLKLIENLKVRKCCYKKRTVGLLRKIKDLSILCGIPACSVISGPGDTKPKIWPSPKVAKQLLQRLEEVPKGVKSRKVVTQLSFMRDKTKKLENQLARLKERNNEKYMSVLMHQIHHDGKSLSDLEPSDLKCLLGYVEQKLNKVRMRTKHFKQVLPPNPPPPPLVSCPQENEVLKKQSSLDLGKDIDLVNSGFNNDNNVGSSSMGLPPPHANLSDVHMVFPQENFGGFNNVSDLGVFPPSNFGDLIGESDLGSEVFSLSYFGGLIGESDSRLGAFPLENFGNLNDESDHLGSKVLPPQGNFEGVNGENDLWLLPQGNFGGLNGESDEGNYEGLNVGSDLGVLPQGNFGGLNGESDEGIYEGLNVGSDSGVLPQVNFGDLNGESDEGNCEGLDVGSDSGMLPQDNFGGLNGESDLGMLLEDNFEGLNGERGDSSHVWPEGNFGDLNDGSDRLKMYLEGNFEGLNGENNSGILNGISTDEIGGSNIWPSYGHFESSIGGSYKEIEQHNENQGWAINNTGLPPPHANLSDVDMVFPQENFGGFNNVSDLEVFPPSNFGDLIGESDLGSEVFSFSDFGGLIGESDSGLGAFPLENFGNLNNESDHLGSKVLLPQGNFEGVNGENDLWLLPQGNFGGLNGESDEGNYEALNVGSDSGVLPQGNFGGLNSQSDEGNYEGLNVGSDSGMLPQDNFGGFNGESDLGMLLEDNFEGLNGERGDSSQVWPEGNFGDLNDGSDPLKMYLEGNFEGLSGENNSGILNGSSTNEIGGRNIWPSYGHFESSIGGSYMEIEQHNENQGWAIDNTGLIRGYQNNSGANTIEVAMGRFDANIVGNYNGNNLNSGLPTHGNFVSCGEFGSDAQVPTFGGNVP. 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00265 904 SMART madsneu2 36 95 IPR002100 GO:0003677|GO:0046983
Seca6g00265 904 Gene3D - 50 132 IPR036879 GO:0003677|GO:0046983
Seca6g00265 904 CDD MADS_SRF_like 42 119 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca6g00265 904 MobiDBLite consensus disorder prediction 1 36 - -
Seca6g00265 904 MobiDBLite consensus disorder prediction 1 27 - -
Seca6g00265 904 SUPERFAMILY SRF-like 38 130 IPR036879 GO:0003677|GO:0046983
Seca6g00265 904 Coils Coil 122 149 - -
Seca6g00265 904 SUPERFAMILY Formin homology 2 domain (FH2 domain) 11 21 - -
Seca6g00265 904 ProSiteProfiles MADS-box domain profile. 36 82 IPR002100 GO:0003677|GO:0046983
Seca6g00265 904 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 86 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00265 Seca-Chr6 6685184 6687898 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00265 36 201 Type I MADS-box Gene Family AT2G40210 35.542 2.90e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca6g00265 SRF-TF 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00265 - - gmx:106798339 215.312