Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00263 ATGTATAAGAAACTGAGGCTTACAAAGGATCAATCAGACATACTTGAAAACAACTTCAAGCTCCATACCACTCTTAATCATGTCCAGAAACAAGAACTTATTGACCAATTGAATTTAAATACTAGACAAATTGAAGTTTGGTTTCAGAACAGAAGAGCAAGAAAGCTGGCTATATATAGCCATGTTTCACTTTCAATGGCTCATGGTGGTGGCTCAAGAGGTGCTGGAGGAGCTGCTCCAGTAAACCCTTCACCTCTTGACCCTACAACGAATCCCTTTAGTTTCTATTACATTCACCCGGGAGAGCATCCCTCTACTCCACTGGTGTCACCTTTGCTCACAGTGAAGAATTATCATAGCTGGTCCAGAGCTATGAGAAGGTCATTGATCTCCAAAAACAAATTCAAATTTGTTGATGGCTCCCTGCCACCTCCAATTGCATTTGATCCTGCTTTTGAAGCTTGGGAAAGATGTAATAACGTTGTCATGTCTTGGATTCTCAACTCAATTGATCCTATCTTTTCTCAAAGTATAGAATATGTGGATGTTGCTGCCACAACTTGGAAACTGCTTAAGGACAGATTCTCACAAGGAGATCGTGTGAGAATTTTTAAACTGCAAGAAGAACCGATGGCTATGAAGCAAGGTACCAATTTTGTAGCTCACTACTTTATTGAAATGACTAAAATATGGGATGAACATGAAAACTATAGACCTCTCCCTGATTGTGTATGTCCTATGAAGTGTGTATGTATGGCTAGTAAGAATGGGAGGTTTTCCGAGAAGAAGATTGTATCATGA 801 0.397 MYKKLRLTKDQSDILENNFKLHTTLNHVQKQELIDQLNLNTRQIEVWFQNRRARKLAIYSHVSLSMAHGGGSRGAGGAAPVNPSPLDPTTNPFSFYYIHPGEHPSTPLVSPLLTVKNYHSWSRAMRRSLISKNKFKFVDGSLPPPIAFDPAFEAWERCNNVVMSWILNSIDPIFSQSIEYVDVAATTWKLLKDRFSQGDRVRIFKLQEEPMAMKQGTNFVAHYFIEMTKIWDEHENYRPLPDCVCPMKCVCMASKNGRFSEKKIVS. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00263 266 SMART HOX_1 3 62 IPR001356 GO:0003677
Seca6g00263 266 SUPERFAMILY Homeodomain-like 3 61 IPR009057 -
Seca6g00263 266 PANTHER CCHC-TYPE DOMAIN-CONTAINING PROTEIN 92 242 - -
Seca6g00263 266 CDD homeodomain 3 54 IPR001356 GO:0003677
Seca6g00263 266 Pfam Homeodomain 4 54 IPR001356 GO:0003677
Seca6g00263 266 Gene3D - 6 55 - -
Seca6g00263 266 Pfam gag-polypeptide of LTR copia-type 99 145 IPR029472 -
Seca6g00263 266 ProSiteProfiles 'Homeobox' domain profile. 1 58 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00263 Seca-Chr6 6525151 6526510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00263 3 54 Homeobox Transcription Factor Family AT4G37790 75.000 2.53e-18 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca6g00263 Homeodomain 9.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00263 - - gmx:100783177 190.66