Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00256 ATGTCGCGGAAGGGTTTGATGGAACAAGACCTGAGTAAGTTGGATGTGACCAAGTTGCATCCACTTTCTCCTGAAGTCATATCTCGGCAGGCTACTATTAATATTGGCACCATTGGCCATGTGGCACATGGAAAGTCAACAGTTGTGAAAGCCATATCAGGTGTTCAGACTGTGCGGTTTAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCTATGCAAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTCCAAGGCCTATGTGCTACAAGGCTTATGGAAGTGGAAAGGAAGACAGTCCTATGTGTGATGTACCAGGGTTTGAAAACTGCAAGATGAAATTGCTAAGACACGTTTCTTTTGTGGATTGCCCGGGACATGATATTCTCATGGCTACAATGCTTAATGGAGCAGCAATCATGGATGGAGCTTTGCTACTCATAGCTGCTAATGAAAGCTGCCCACAACCACAAACCTCTGAGCATTTAGCTGCTGTGGAAATTATGCGTCTACAGCACATTATAATACTTCAGAACAAGGTAGACCTGATTCAAGAAAATGTGGCTACCAATCAGCATGAAGCTATTCAGAAGTTTATTCAAGTGAATCCGTTGCCAATAACTTACATGATACTCTCCCATTTTTTGGTGGCTTACCAGGGAACTGTTGCTGATGGTGCACCAGTAGTACCTATCTCAGCACAATTGAAGTACAATATTGATGTTGTATGTGAGTATATTGTGAAGAAGATCCCAATCCCTGAAAGGAACTTCATTTCTCCACCTAATATGATAGTGATTCGGTCATTCGATGTCAATAAACCTGGTTTTGAGGTGGATGATATAAAAGGAGGCGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTGAAGGTCAACCAATTCATTGAAGTTCGACCTGGAATTGTTGTTAAAGACGAGAGTGGAAACATCCGATGCACACCCATATACTCCAGAATAGTCTCATTGTATGCTGAACAAAATGAGCTTCAATTTGCTGTGCCTGGAGGCCTAATTGGTGTTGGGACAACAATGGATCCCACTTTGACACGTGCTGACAGGTTGGTAGGGCAAGTTTTAGGAGAGGTTGGATCACTGCCTGAGGTTTTCGTTGAACTTGAGGTAAATTTTTTCTTGCTTAGAAGGCTTCTTGGTGTCCGGACAAAGGGCTCTGAGAGACAGGGAAAGGTCTCTAAGCTGGCCAAAGGAGAGATGTTAATGTTGAACATAGGATCAATGTCAACAGGGGCCAGAGTAATTGCTGTGAAGAATGACTTGGCGAAGTTGCAACTTACTTCCCCTGTGTGCACTAGCAAGGGTGAGAAGATTGCACTCAGTCGACGTGTTGAGAAGCATTGGCGTCTTATTGGCTGGGGTCAAATCCAAGCTGGAATCACTCTTGATGTTCCCACTGCCCCCATTCTGAGTTGA 1458 0.4369 MSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDSPMCDVPGFENCKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVATNQHEAIQKFIQVNPLPITYMILSHFLVAYQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFISPPNMIVIRSFDVNKPGFEVDDIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPTAPILS. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00256 485 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Seca6g00256 485 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Seca6g00256 485 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Seca6g00256 485 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Seca6g00256 485 CDD eIF2_gamma_III 376 470 IPR015256 -
Seca6g00256 485 Pfam Elongation factor Tu GTP binding domain 32 255 IPR000795 GO:0003924|GO:0005525
Seca6g00256 485 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 478 - -
Seca6g00256 485 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 258 IPR000795 GO:0003924|GO:0005525
Seca6g00256 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 261 IPR027417 -
Seca6g00256 485 FunFam Eukaryotic translation initiation factor 2 subunit gamma 30 259 - -
Seca6g00256 485 Pfam Initiation factor eIF2 gamma, C terminal 381 470 IPR015256 -
Seca6g00256 485 Gene3D Translation factors 262 375 - -
Seca6g00256 485 CDD eIF2_gamma_II 260 373 IPR044127 GO:0000049
Seca6g00256 485 FunFam Eukaryotic translation initiation factor 2 subunit gamma 260 375 - -
Seca6g00256 485 CDD eIF2_gamma 33 259 IPR044128 GO:0005525
Seca6g00256 485 Gene3D Translation factors 376 474 - -
Seca6g00256 485 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 374 471 IPR009001 -
Seca6g00256 485 SUPERFAMILY Translation proteins 259 373 IPR009000 -
Seca6g00256 485 FunFam Eukaryotic translation initiation factor 2 subunit gamma 376 475 - -
Seca6g00256 485 Gene3D - 30 259 IPR027417 -
Seca6g00256 485 Pfam Elongation factor Tu domain 2 287 369 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00256 Seca-Chr6 6291600 6297016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00256 1 483 Eukaryotic Initiation Factors Gene Family AT1G04170 86.570 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00256 K03242 - gmx:100784099 892.493