Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00252 ATGGAGAAGTATCTGAGAGAAAACTTTCACGTCCAGCCTAAGCGTCCCTCAGAGGCCGCCCTTCGCCGATGGAGATCCGCCGTTGCCGTCGTCAAAAACCCCCGCCGCCGCTTCCGCATGGTTGCCAATCTTGCCCAACGCGCCGAAGCCGAAAAAAAGCGCACGAAGCTCCAGGAAAAGATACGGGTGGCTCTCTATGTGCAAAAAGCAGCGTTGCATTTTATAAACGGTAATTTACATTTAGAAGCTGGGAGCCGAGGTAGTTACATGCTCTCCAAAGAGATTCAGGAAGCAGGTTTCGGAATTGAACCCGATGAATTAGCATCCATTGCTCGATCCCATGACACCAAATGTTTAGAACGTCACGATAAAGTTGAAGGATTAGCAAGAGCTGTCCGTGTGTCTTTGCAAGATGGCATTAGTTCACACGATGTACAACATAGACAAAATATCTATGGTTGTAACCGCCTTGCAGAGAAGCCCTCTAGAAGTTTCTGGATGTTCGTTTGGGATGCAATGCAAGACTTAACTCTAATTATCCTTATGGCATGTTCTGTGGTTTCAGTAGGTGTTGGAATCTCAACTGAAGGTTTTCCAAAAGGTATGTATGATGGAGTGGGAATCATACTATGTATTATTTTAGTGGTCTTTGTCACTTCAATCAGTGACTATAAACAGTCTTTGCAATTTAAGGCTTTGGATAGAGAAAAGAAAAATGTCAGCATTCAAGTTACAAGAGATTGTAGAAGACAAAAGGTTTCAATTTATGATCTTGTGGTAGGAGATATAGTCTATCTGTCTATTGGAGATGTAGTTCCTGCAGATGGGTTATTCATATCAGGTTTTAGCTTATTAATTGATGAATCAAGTCTATCTGGTGAGAGTGAGGCTGTGAATGTTGACCAACAGAAGCCTTTTCTTCTAGCTGGGACCACAGTGCAAGATGGGTCTGCTAAGATGCTAGTGACTGCTGTTGGTATGAGGACTGAATGGGGAAGATTGATGGAAACTCTGAATGAAGGGGGAGATGATGAGACACCTCTTCAGGTCAAATTAAATGGGGTTGCAACCATTATTGGAAAGATAGGATTGGGTTTTGCCCTTCTTACATTCCTTGTTCTTACTGGCAGGTTTTTGTTGGAGAAAATAGCCCACCATGAGATCACAAAATGGTCTCTAAATGATGCATCTAAGCTTCTAAATTTCTTTGCTACTGCTGTCATTATAATAGTTGTGGCAGTTCCTGAGGGGTTGCCTTTGGCAGTGACACTAAGCCTTGCATTTGCAATGAAGAAATTAATGAATGATAAGGCACTAGTCAGGCACCTCTCTGCATGTGAGACAATGGGTTCTGCTGGTTGCATTTGCACAGATAAAACAGGGACTTTGACCACAAATCACATGGTTGTAGACAAAATATGGATTTGTGAACAAACTAAGGCAATTAAAAGTGATGCTGTGTTGAAACAATCAATTTCTGAAGAGATATTTGATCTCCTTTTGCAGTCCATATTCCAGAATACTGGCTCAGAGATAGTCAAAGGGAGAGATGGAAAGAACAAGGTCATGGGTACTCCAACAGAGTCAGCATTGCTGGAATTTGGTTTGCTTTTGGGAGGTTATTCTGATTCCAAGTTCTATAATGACAAGTATAAGGTAATAAAGGTTGAACCTTTCAATTCAGTCAGAAAAAAGATGTCAGTGCTTGTGGCTCTTCCTGATAACAAGTCTCGAGCATTTTGTAAAGGAGCATCAGAAATAGTTTTGAAAATGTGTGACAAAGTTGTTAATGCAGATGGCAAAGTAGTCCTTTTGAACGAACAGCAAAGAAATAGCATCACAGAAGTTATCAATGGTTTTGCTTCTGAGGCTCTGAGAACACTCTGCTTAGCCTTCAAGGATATTGAAGGATCCTCTGATGGTACTACTATTCCTGAGGAGAAGTACACGTTAATAGCTATTATTGGAATCAAGGATCCAGTGAGACCTGGAGTTAAAGAAGCTGTTAAGACTTGTTTAGAAGCTGGGATTACCGTTAGAATGGTAACAGGTGACAACATAAATACTGCTAAAGCGATTGCTAGAGAATGTGGCATCTTGACAGATGGATTGGCGATAGAGGGACCAGAATTCCGGAAAAAGACCCAGCGAGAAATGGAAGAGATAATACCAAAAATACAGGTAATGGCTCGATCCTTGCCTCTTGACAAGCACACCTTAGTGACCCATTTGAGGAATGACTTTAATGAAGTTGTGGCAGTAACTGGTGATGGGACCAATGATGCCCCAGCGTTGCATGAGGCTGATATTGGACTTGCTATGGGTATTGCTGGGACTGAGGTTGCAAAGGAGAATGCGGATGTGATTGTAATGGATGATAACTTCACCACCATAGTGAATGTTACCAGATGGGGCCGTTCAGTTTATATTAATATACAGAAATTTGTCCAGTTCCAATTAACAGTTAATGTTGTAGCTCTCATGCTGAATTTTGTTTCAGCTTGCGTGTCAGGCTCTGCTCCTCTTACTGCTGTTCAAATGCTTTGGGTAAACATGATCATGGACACTCTTGGCGCATTGGCATTGGCTACAGAACCTCCCCATGATGGACTGATGAAGAGGCCACCTATTGGAAGGAATGCCAAATTCATCACCAGGGTCATGTGGAGGAACATAATTGGTCAGAGTATCTATCAAATTTTTATCCTTTTAGTCCTCAAATTTCGCGGGAAACAGATTCTCAAGCTCAATGGACCTGATGCCACCTCTGTTCTGAATACTGTCATATTCAACACCTTTGTGTTTTGCCAGGTATTCAATGAGGTAAACAGCCGTGACATGGAGAAGATTAATGTATTCCAAGGCATGTTCAAGAGCTGGGTTTTCCTAATGGTAATGTTCTCAACGGTATGCTTTCAAGTGATAATAGTAGAATATTTGGGTGCTTTTGCTCAAACAGTGCCACTGAGCCGGGAGTTGTGGTTAGCCAGCGTCATGATTGGTGCGGTAAGTTTACTCGTAGCTGTTGTCTTGAAGTGCATTCCAGTTCCTACGAGTCATTACGTAGCAACCCATCATGATGGTTACGAGCAGCTCCCCACTGGACCTGACCTGGCATGA 3120 0.4231 MEKYLRENFHVQPKRPSEAALRRWRSAVAVVKNPRRRFRMVANLAQRAEAEKKRTKLQEKIRVALYVQKAALHFINGNLHLEAGSRGSYMLSKEIQEAGFGIEPDELASIARSHDTKCLERHDKVEGLARAVRVSLQDGISSHDVQHRQNIYGCNRLAEKPSRSFWMFVWDAMQDLTLIILMACSVVSVGVGISTEGFPKGMYDGVGIILCIILVVFVTSISDYKQSLQFKALDREKKNVSIQVTRDCRRQKVSIYDLVVGDIVYLSIGDVVPADGLFISGFSLLIDESSLSGESEAVNVDQQKPFLLAGTTVQDGSAKMLVTAVGMRTEWGRLMETLNEGGDDETPLQVKLNGVATIIGKIGLGFALLTFLVLTGRFLLEKIAHHEITKWSLNDASKLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNHMVVDKIWICEQTKAIKSDAVLKQSISEEIFDLLLQSIFQNTGSEIVKGRDGKNKVMGTPTESALLEFGLLLGGYSDSKFYNDKYKVIKVEPFNSVRKKMSVLVALPDNKSRAFCKGASEIVLKMCDKVVNADGKVVLLNEQQRNSITEVINGFASEALRTLCLAFKDIEGSSDGTTIPEEKYTLIAIIGIKDPVRPGVKEAVKTCLEAGITVRMVTGDNINTAKAIARECGILTDGLAIEGPEFRKKTQREMEEIIPKIQVMARSLPLDKHTLVTHLRNDFNEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVMDDNFTTIVNVTRWGRSVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGRNAKFITRVMWRNIIGQSIYQIFILLVLKFRGKQILKLNGPDATSVLNTVIFNTFVFCQVFNEVNSRDMEKINVFQGMFKSWVFLMVMFSTVCFQVIIVEYLGAFAQTVPLSRELWLASVMIGAVSLLVAVVLKCIPVPTSHYVATHHDGYEQLPTGPDLA. 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00252 1039 ProSitePatterns E1-E2 ATPases phosphorylation site. 458 464 IPR018303 -
Seca6g00252 1039 CDD P-type_ATPase_Ca_PMCA-like 145 888 - -
Seca6g00252 1039 Gene3D - 466 660 IPR023299 GO:0000166
Seca6g00252 1039 PANTHER CATION TRANSPORTING ATPASE 83 1016 - -
Seca6g00252 1039 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 462 665 IPR023299 GO:0000166
Seca6g00252 1039 Coils Coil 40 60 - -
Seca6g00252 1039 PRINTS H+-transporting ATPase (proton pump) signature 755 771 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g00252 1039 PRINTS H+-transporting ATPase (proton pump) signature 613 631 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g00252 1039 PRINTS H+-transporting ATPase (proton pump) signature 787 812 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g00252 1039 SUPERFAMILY Calcium ATPase, transmembrane domain M 124 1016 IPR023298 -
Seca6g00252 1039 Pfam Cation transporter/ATPase, N-terminus 123 188 IPR004014 -
Seca6g00252 1039 NCBIfam HAD-IC family P-type ATPase 208 517 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g00252 1039 NCBIfam HAD-IC family P-type ATPase 721 843 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g00252 1039 NCBIfam HAD-IC family P-type ATPase 552 701 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g00252 1039 FunFam Calcium-transporting ATPase 772 1018 - -
Seca6g00252 1039 SFLD p-type atpase 438 807 IPR044492 -
Seca6g00252 1039 Pfam Cation transporting ATPase, C-terminus 840 1013 IPR006068 -
Seca6g00252 1039 Pfam haloacid dehalogenase-like hydrolase 454 769 - -
Seca6g00252 1039 Pfam E1-E2 ATPase 241 434 - -
Seca6g00252 1039 FunFam Calcium-transporting ATPase 16 76 - -
Seca6g00252 1039 Gene3D - 171 1014 - -
Seca6g00252 1039 Gene3D - 453 800 IPR023214 -
Seca6g00252 1039 FunFam Calcium-transporting ATPase 466 660 - -
Seca6g00252 1039 FunFam Calcium-transporting ATPase 218 339 - -
Seca6g00252 1039 SUPERFAMILY HAD-like 455 860 IPR036412 -
Seca6g00252 1039 SMART Cation_ATPase_N_a_2 119 193 IPR004014 -
Seca6g00252 1039 Gene3D - 139 339 - -
Seca6g00252 1039 FunFam Calcium-transporting ATPase 652 800 - -
Seca6g00252 1039 SFLD Haloacid Dehalogenase 438 807 - -
Seca6g00252 1039 SUPERFAMILY Calcium ATPase, transduction domain A 241 337 IPR008250 -
Seca6g00252 1039 NCBIfam calcium-translocating P-type ATPase, PMCA-type 115 1016 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca6g00252 1039 PRINTS P-type cation-transporting ATPase superfamily signature 755 774 - -
Seca6g00252 1039 PRINTS P-type cation-transporting ATPase superfamily signature 287 301 - -
Seca6g00252 1039 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Seca6g00252 1039 PRINTS P-type cation-transporting ATPase superfamily signature 779 791 - -
Seca6g00252 1039 PRINTS P-type cation-transporting ATPase superfamily signature 456 470 - -
Seca6g00252 1039 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Seca6g00252 1039 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Seca6g00252 1039 Gene3D - 16 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00252 Seca-Chr6 6194798 6203782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00252 57 1036 Primary Pumps ATPases AT3G57330 69.521 0.0 1401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00252 K01537 - gmx:100801260 1770.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00252 6 6194798 6203782 Seca6g00252 6 6194798 6203782 ECH