Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00244 ATGGCACCACCAACAAAAGGAAACAACAACGAAGAAGAAAAGCAATTGGTGAACAAGTCTGAAGCCAAAACATTAGTGCAGGTGCAGAAGCAGAGTAATAAGAATAACAAGAAGGAAAGGTCATCATATGTAGGAGTGAGGAAGAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGATACCACAAGGAACAGCACTAGGGTGTGGCTAGGAACCTTTGACACTGTAGAGGCTGTTGCTTTAGCTTATGACCAAGCTGCTTTTTCCATTACCAACAGTTGTTCACCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAATTGTCATCAAAGGCTAAAAAGAGTAAAGGGAAACACGAATTTGAGGCATTAAGACCAAATGTGTTGGTGTTAGAGGACTTGGGAGTTGAATATCTTCAGCAGCTTCTAAGCATATCCGATCCAACTGCAACCACTAGTTACTTCAAGTAA 477 0.4256 MAPPTKGNNNEEEKQLVNKSEAKTLVQVQKQSNKNNKKERSSYVGVRKRPWGKFAAEIRDTTRNSTRVWLGTFDTVEAVALAYDQAAFSITNSCSPALALKERHCIQRKLSSKAKKSKGKHEFEALRPNVLVLEDLGVEYLQQLLSISDPTATTSYFK. 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00244 158 SMART rav1_2 42 97 IPR001471 GO:0003700|GO:0006355
Seca6g00244 158 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Seca6g00244 158 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Seca6g00244 158 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Seca6g00244 158 MobiDBLite consensus disorder prediction 1 43 - -
Seca6g00244 158 PANTHER DNA-BINDING DOMAIN 20 94 IPR044808 GO:0003700|GO:0009873
Seca6g00244 158 CDD AP2 41 90 IPR001471 GO:0003700|GO:0006355
Seca6g00244 158 ProSiteProfiles AP2/ERF domain profile. 42 101 IPR001471 GO:0003700|GO:0006355
Seca6g00244 158 SUPERFAMILY DNA-binding domain 41 92 IPR016177 GO:0003677
Seca6g00244 158 Gene3D AP2/ERF domain 42 95 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00244 Seca-Chr6 5892849 5893404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00244 4 153 AP2-EREBP Transcription Factor Family AT3G23240 39.227 1.74e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca6g00244 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00244 K14516 - gmx:100782036 170.629