Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00236 ATGGTTGTTGACATGTTAGGTTCATTCATCTCTAGCTTCTTGCAAGTGTTGTTAGATAGGATAGCTCGTCGTGAGCTTCTAGACTTCTTCAGGGGCAACCATCTTGATGAGGCCCTTCTGCAGAAGTTGAAGATGCTTTTGCTATCTGTCACTACAGTGCTTAGTGATGCTGAGGAGAAACAGTTTACTGATTCATTGGTCAAAGATTGGGTTGATAGGCTTAAAAATGCTGCCTATGATGCTGATGATGTCTTGGATGAGATTGCCACCAAAGCCATGCAAGACAAGATGGATTCTGGGTTTCACACAACCTTAGATCAGGTAAGAGATTATGCTGCTTCTCTCAATCCATTTGCTGAACGAGTTAAATCAAAAGTTGATAGGATAGTTGAGAGGTTGAAGTCTATAATAGAGCATAAAGACCTTCTTGGTCTTAAGGAAAGTGGTGTAGTTAAATCACTCACTGTAACTTCACCCACAACTTCCTTGGTGGATGAACATAGTGTCTATGGCAGAAATGGTGATAAGGAGAAGATTATTAATGACTTTCTGTTGTCATCATCAGGCAACTCCAATGGAGAAGGGGTGCCTGTGGCTGTGGTTGCTATTGTTGGGATGGGAGGGGTAGGTAAGACTACCCTTGCTCAGATTTTGTACAATGATGACCGGGTGAGGAATCATTTTCAATCAAGAGCATGGACCTCTGTATCAGAGACTTTGAACGTGTATGAAATAACCAAAAAGGTTTTTGAGTCATTCACTCTGTGGTATTCTAATATCTCAGACTTGAATGTGCTCCAAATCAAGCTCAAGGATAGGTTGGCAAGACAAAGATTTCTACTTGTGTTAGATGGGTATTGGAATGAGAATTTTCTTGACTGGGACATCCTCCAAAGACCCTTTCTATCAGGAAACTGTGGAAGTAGAATCATTGTCACCACTCGCAGTCAAAGTGTTGCAACAGCAATTCGTGCTAATTTAACTCATTCCCTTTCGCTTCTATCACATGAAGATACCTGGAAGTTGTTCTCAAGTCATGCATTCAAATCAGGAAACTCTGGTGAACATCCTGTCTTGGCAGAAATTGGCCAGAAAATAGTAAAGAAGTGCAATGGTCTCCCCTTAGCTGCAAAATCACTAGGGAGTCTCCTACGTTCAAAAGAGGATGCTGAGGAGTGGGAAAGCATATGCAATAGTAGGATATGGGAGTTACCAAGTGATAAAAGCAGCATCCTTCCTGCTTTAAGATTGAGCTACAGTCATTTACCTTCTCATTTAAAGCAATGCTTTACTTATTGTTCCATATTTCCTAAACGCTATGAAATAAAGAAGTGGAACTTGATCTATTTATGGATGGCTGAAGGTATCCTGCCACAGCCAAAAACAGAGAAGAGAATGGAAGATGTAGGAGAAGAATGCTTTCAAGAGTTACTATCTAGATCATTCTTTCATCAGTCAACTCACAACATGTCATGTTATGTGATGCATGACCTTATCAATGACCTAGCACAGTGTGTTGCAGGTGAATTCTGTTACAAGCTAGATGATAATAAACCAAGCAAAATCACCATGAGTGTTCGTCATTTATCGTATTTACAAGACATGTATCATGAACCTGAGAAGTTTGAGATCCTTTCTGAATTCCAGCAACTCAGGACCTTCCTACCATTCAGATTCTCAGTCTCTGGTTACTCCCCTTCAATTCCTAGTATGATTATGGTTCAATTACCAAAACTGAAACGCCTGCGTGTGCTCTCTTTGTCTCATTATCCAATTACCAAGTTGCCGGATTCAGTTGGAAACTTAATGTATCTGCGGTATTTGAATCTTGCTCACACTGGAATTGAGTGCCTGCCTGATTCTGTCAGCACTTTGTACAACTTGGAGACATTGTTGTTGTCAGGTTGTCGTCGTCTCACAATGTTACCAACAAACATGTCCAACCTTGTCAACTTGCGCCATCTTGATATTATTGGTAGCAGCGTGACACAGATGCCTGCAAAATTTGGTAGACTAAAATCTCTCCAAGTGTTGACTAGTTTTGTTGTTAGCAGTGATGGGGGAGCAAAAGTTAGTGAGTTGGGGGAGCTTTCAGAACTTCATGGAGCACTTTTGATTGTGAACCTGCAGAATGTAGTTGATGCAACAGAAGCTTCCAATGCCAGGTTGAGGAGTAAGAAATATCTTCATGAGCTAGAATTCAAGTGGACAACTACAACTCACAATGTGCAGAGTGAAACTAAAGTACTCAGCATGCTAGAGCCACATCAAAATGTGAAAAGACTTAAAATTCAAAATTTTGGTGGTGATAAATTGCCAAATTGGTTGGGGAGCACTTCATTCTCTAGTATGGCGTTTCTACATCTTGCTGACTGTGGAAATTGCCTGTCATTGCCATCACTTGGACAATTGGCCTCCCTCAGAGAACTCTATATAACAAAGATGACAAGCCTACAAGAGGTGGGTCCAGAATTCTATGGGAATGTAATTGAGTCATTCAGATCCTTGAAGATCATGAAGTTTGAGAACATGCCCAATTGGGAAAAATGGTCAAGCAGAGAACTTGAACAAAGTGGGGGATTCCCTTCACTCCAAGAGCTTTACATACAGAGATGTCCTAAACTGACCATAAGGTTACCTGACCAACTTCCTTCCTTGGATAAATTAATGATCACTGCATGTCAAGCTCTCACAGATTCAGTGACACGGGTTCCAAGATTGAGAGAATTAGAGCTAACTGGTTGTGATGCATTGGTGTCATTATCTGACCAAATGATGCAGGGAAATAAATGTCTTCAAATCATGGCCATAAAAAATTGCTCATCTCTGGTCACCATATCTAGGGATGGCCTTCCAAGTACACTAAGATCTCTTGAAATCTATGAGTGCAGGAATTTACAGCTATTCCATCCTCACAGTTTGATGCAGGACACTCACTACTATCCTGCCCTTGAGAGATTGCACTTAAAAAGTTGCTGTGATTCTCTTATCTCCTTTCCATTATCCCTCTTTGCCAAGCTTGAAGATCTCCGTGTACAAGACTGTAGCAATCTCCAGTTGATTTCATCTGATCCAAACAGTCTCCCATATCTTAGAAAATTGAAACTGAAGGAATGCTCCAAACTGGCTTGGTTTCCTGAAGGAGGGTTGCCTGCTCCCAAACTTGAGTCACTTTCTATCACCAAATGTGATGATCTCTCACCTGAGACTGCATGGGGTCTTCAGGCAATGACATTACTGACTTCTCTTCATATCAGTGGACTTCCTAGTCTCACTTCACTAGAACACACAGGAATTCAGCACCTAACCTCTCTCAAAATTCTGAAGATTAAAGCTTGTGATAACCTTGCATCTCTACCTTTAGAGAGATTAGTTACTTCCCTTTCTCATCTTACCATCAGAGCATGCCCATTGTTAACAGTGCTGTGTGCAAGGGACACAGGGGAATACTGGAGTATGGTTTCTCTCATACCCTTCAGAGTCATTGAAGACTAG 3495 0.412 MVVDMLGSFISSFLQVLLDRIARRELLDFFRGNHLDEALLQKLKMLLLSVTTVLSDAEEKQFTDSLVKDWVDRLKNAAYDADDVLDEIATKAMQDKMDSGFHTTLDQVRDYAASLNPFAERVKSKVDRIVERLKSIIEHKDLLGLKESGVVKSLTVTSPTTSLVDEHSVYGRNGDKEKIINDFLLSSSGNSNGEGVPVAVVAIVGMGGVGKTTLAQILYNDDRVRNHFQSRAWTSVSETLNVYEITKKVFESFTLWYSNISDLNVLQIKLKDRLARQRFLLVLDGYWNENFLDWDILQRPFLSGNCGSRIIVTTRSQSVATAIRANLTHSLSLLSHEDTWKLFSSHAFKSGNSGEHPVLAEIGQKIVKKCNGLPLAAKSLGSLLRSKEDAEEWESICNSRIWELPSDKSSILPALRLSYSHLPSHLKQCFTYCSIFPKRYEIKKWNLIYLWMAEGILPQPKTEKRMEDVGEECFQELLSRSFFHQSTHNMSCYVMHDLINDLAQCVAGEFCYKLDDNKPSKITMSVRHLSYLQDMYHEPEKFEILSEFQQLRTFLPFRFSVSGYSPSIPSMIMVQLPKLKRLRVLSLSHYPITKLPDSVGNLMYLRYLNLAHTGIECLPDSVSTLYNLETLLLSGCRRLTMLPTNMSNLVNLRHLDIIGSSVTQMPAKFGRLKSLQVLTSFVVSSDGGAKVSELGELSELHGALLIVNLQNVVDATEASNARLRSKKYLHELEFKWTTTTHNVQSETKVLSMLEPHQNVKRLKIQNFGGDKLPNWLGSTSFSSMAFLHLADCGNCLSLPSLGQLASLRELYITKMTSLQEVGPEFYGNVIESFRSLKIMKFENMPNWEKWSSRELEQSGGFPSLQELYIQRCPKLTIRLPDQLPSLDKLMITACQALTDSVTRVPRLRELELTGCDALVSLSDQMMQGNKCLQIMAIKNCSSLVTISRDGLPSTLRSLEIYECRNLQLFHPHSLMQDTHYYPALERLHLKSCCDSLISFPLSLFAKLEDLRVQDCSNLQLISSDPNSLPYLRKLKLKECSKLAWFPEGGLPAPKLESLSITKCDDLSPETAWGLQAMTLLTSLHISGLPSLTSLEHTGIQHLTSLKILKIKACDNLASLPLERLVTSLSHLTIRACPLLTVLCARDTGEYWSMVSLIPFRVIED. 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00236 1164 Gene3D Ribonuclease Inhibitor 697 900 IPR032675 -
Seca6g00236 1164 Gene3D Ribonuclease Inhibitor 563 696 IPR032675 -
Seca6g00236 1164 FunFam Probable disease resistance protein At1g63360 419 505 - -
Seca6g00236 1164 PRINTS Disease resistance protein signature 273 287 - -
Seca6g00236 1164 PRINTS Disease resistance protein signature 200 215 - -
Seca6g00236 1164 PRINTS Disease resistance protein signature 370 384 - -
Seca6g00236 1164 PRINTS Disease resistance protein signature 623 639 - -
Seca6g00236 1164 Gene3D - 32 137 - -
Seca6g00236 1164 PANTHER DISEASE RESISTANCE PROTEIN RP 40 886 IPR044974 GO:0006952
Seca6g00236 1164 Pfam Rx N-terminal domain 9 97 IPR041118 -
Seca6g00236 1164 Gene3D - 152 328 IPR027417 -
Seca6g00236 1164 SUPERFAMILY L domain-like 494 894 - -
Seca6g00236 1164 Gene3D Ribonuclease Inhibitor 901 1158 IPR032675 -
Seca6g00236 1164 Coils Coil 706 726 - -
Seca6g00236 1164 FunFam Probable disease resistance protein At1g61300 160 327 - -
Seca6g00236 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 433 IPR027417 -
Seca6g00236 1164 Gene3D - 333 423 IPR042197 -
Seca6g00236 1164 Pfam NB-ARC domain 198 419 IPR002182 GO:0043531
Seca6g00236 1164 Gene3D - 424 504 IPR036388 -
Seca6g00236 1164 SUPERFAMILY RNI-like 861 1139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00236 Seca-Chr6 5731871 5735365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00236 192 897 WRKY Transcription Factor Family AT5G45050 23.139 1.01e-11 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00236 - - cam:101492735 1757.27