Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00228 ATGGGTTACCTCTACCTTTCTTGCAAAGCTGAATCCGCAGTCTCAACTTCCAATTCTGTATCTTCTTCGAAAGAGAAAGAGAAAGGCATCAAGATCCAAGAGTTTCAGTACAGTGACCTTGAAGCTGCCACCAATGGCTTCTCAGACCGCAAGCTTCTCGGCAAAGGAAGCCATGGCTATGTCTACAAAGCTGTTGTTCGTGGCCGTCCTGTTGCTGTGAAGAGACCTTCAAGACCTCACTCTCTTCTTCCTCGACCCATCTCTTCTTCTTCACCCGCTGAGATCACCAACGAGGTTGACAACGAGATCGACATCTTGTCCAAAATTCAGAGCCCCAGGTTGGTCAATTTGGTGGGTTTCACCAATGATTCAAAAGATAGGCTTTTGGTTGTTGAGTTCATGAGCAATGGTACCCTTTTTGATGTCCTTCATTCCTCTTCTAGACCCCCCAATTGGGGTAGGAGAATTCGTTTAGCTTTCCAAACTGCTAAGGCTATTGATACCCTTCATTCCTCAACCCCACCTGTTATTCATAGGGATATCAAGTCTGCAAATGTTCTCATTGACCGTAACTTCAATGCCAGGTTAGGTGATTTTGGTTTGGCTCTCATGGGTCATGTTGATGATTATAGACTCAGGTCTACTCCACCTGCTGGTACCATGGGGTATCTTGATCCTTGCTATGTCACTCCTGATAATTTGAGCACAAAGACTGATGTGTTTAGTTTTGGGATTTTGTTGTTGGAGATTATCAGTGGAAGGAAGGCTATTGATATCACATACTCACCACCATCTATTGTGGATTGGGCTATTCCTCTTATCAAGAAAGGGAAGCTTCTGGCTGTTTATGATCCTAGAATTGCACCTCCTGAGGATCCTCTTGTGAGGAAACAACTGGCAGTGATTGCAGCTAAATGTGTTAGGTCTTGTAGGGAGAGAAGGCCTTCCATGAAGGAGATTGTTACTTGGCTTTGTGGGTTGTGTAAATTGGTGCCTCTTCATTCATGGAATGGTTTTAATAACCCTTGCATGATGGTGGAGACTGTGGGACGCCCTGTTGAAGCAAGGAATGCACAATTCAGTTCAAGACTCAAAGAAGAAGGAAAGGTTGATGCTTTGGATGCTAGGTTGTCTAAGTCTGCAGCATTGAGATATTCAAGGAGAGTGTATTCTGATTTGGGGTTCAGCAGCAACTTGATGGACCTTATGGCTACCACTGAGGAGCCTGAGTTTCTAAGAGATGATGCTGATGGAGTGGAACATAGTTCTAATTCTAAATCAGTTGAACAAGTTTCTAGCTCAAGATTTGGCAGTGGAAGATATTTCATAAGAGGAAGAAAAAATCTATACAGGCCTTGTGGTACTGATAAGGATGCATTTGGTGGTTTGAGTAAAGGCCAGATTGTTGGTGAGACTTCAAAACAGGATGGGGTTTCTGGTTCAAATGTGAAAGAAAATCCTCTGCCAGCTGAGGTTATCTAG 1482 0.4372 MGYLYLSCKAESAVSTSNSVSSSKEKEKGIKIQEFQYSDLEAATNGFSDRKLLGKGSHGYVYKAVVRGRPVAVKRPSRPHSLLPRPISSSSPAEITNEVDNEIDILSKIQSPRLVNLVGFTNDSKDRLLVVEFMSNGTLFDVLHSSSRPPNWGRRIRLAFQTAKAIDTLHSSTPPVIHRDIKSANVLIDRNFNARLGDFGLALMGHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIKKGKLLAVYDPRIAPPEDPLVRKQLAVIAAKCVRSCRERRPSMKEIVTWLCGLCKLVPLHSWNGFNNPCMMVETVGRPVEARNAQFSSRLKEEGKVDALDARLSKSAALRYSRRVYSDLGFSSNLMDLMATTEEPEFLRDDADGVEHSSNSKSVEQVSSSRFGSGRYFIRGRKNLYRPCGTDKDAFGGLSKGQIVGETSKQDGVSGSNVKENPLPAEVI. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00228 493 FunFam Serine/threonine-protein kinase-like protein At1g28390 17 133 - -
Seca6g00228 493 MobiDBLite consensus disorder prediction 471 493 - -
Seca6g00228 493 SMART serkin_6 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00228 493 PANTHER OS01G0253100 PROTEIN 21 326 - -
Seca6g00228 493 FunFam Serine/threonine-protein kinase-like protein 134 337 - -
Seca6g00228 493 ProSiteProfiles Protein kinase domain profile. 47 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00228 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Seca6g00228 493 SUPERFAMILY Protein kinase-like (PK-like) 21 324 IPR011009 -
Seca6g00228 493 Pfam Protein kinase domain 48 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00228 493 Gene3D Phosphorylase Kinase; domain 1 17 133 - -
Seca6g00228 493 Gene3D Transferase(Phosphotransferase) domain 1 134 332 - -
Seca6g00228 493 ProSitePatterns Protein kinases ATP-binding region signature. 53 74 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00228 Seca-Chr6 5545192 5546673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00228 25 324 Receptor kinase-like Gene Family AT3G59420 44.444 3.14e-76 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Seca6g00228 Pkinase 1.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00228 - - vum:124832395 809.29