Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00225 ATGGCTGCAACTCCTACCAAGTCTTTCCAATCTCCCTCAAAACCCTACCTCCGATCGCAAACCAATGCCAAATCCACACCCGCTGTAACTCCCGTCACACCACAATCCCTACCTCTTCACAGATCCACGCGCTCAAAGTCCCTCGACTTCTATTCTCCCAAACCTCCCCATGAATCTTGCGAAAATCAACTCGGAACTCCGAAAAGCAGGAAAGCCAGGGAGAATCTTGATCAACCTAGGTCTCGTCGATCCATTGATTACACGAAGGATTTTGGAAAAGATAAAGTCACAACCCGCACAAATGCAACTAGAGGAAATGTAAATGCTTCTGTTGAAGGATCAAAGAAGAGAAATGGGAAGGGGTCAGTTGAAGTTTCCTTTGCTCCAGCATCTCCCGATCAATTGGAAACTAAGAAGAGGAAGAGGGAGGGTGAGAGAACGGTTGTTACTAGAGCTTTGGCTGCGAGAAAAGGGAAATCGGAGAATAGGCAAAAGAATGTGGAGTTGCCAAAGTGCCGTACTTATTATAAAAAAGTTGTTTATGATGGGGGTGAGTTTGAAGTGGGGGATGCTGTTTATGTGAAGAGGAGAGAAGATGCTACTTCTGATGATGAAGATCCTGAAGTGGAGGAGTGTAGGTTGTGTTTTTGTTCTGGCAATGAGATCATGATTGAGTGTGACGATTGTTTAGGTGGGTTTCATTTGAAATGCATGAAGCCGCCGTTGAAGGACGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGTAAGATGGGTAGGGAAGTTAATTTTCCAAAGCCTCCACGGGGTAAGAAACTAGTTAGGACAATGAGGCAGAAGCTTTTATCCAGTGATTTGTGGGCTGCTCATATTGAGAGCATATGGAAAGAAGTAGATGGCAACTACTGGTGTCAAGTAAGGTGGTATACAATCCCAGAAGAGACTTCTGTTGGGCGACAACCACATAACCTGAGCAGGGAGCTATATCGAACCAATGATTTTGCAGACATTGAGATGGAATCTGTCCTTAGACACTGCTATGTCATGACCCCCAAAGAATATGCTAAAGCAAAAGATGAGGGAGATGATATATTCTTCTGTGAGTATGAATATGACATCCACTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAATGGTGAAGAGACTGACAGTGATGAAGACTGGAATGTTGACAAGGAATCAGACTCTGATACTGATGAAGATGTTGAATATGAAGAGGAAAATATTAAAAATGCACAATCTCAACCATCAACAAGCCATCAGTTAGCTGCAAATCTGCACAAGGGACGGTTCTTTGGACTTCAGAAGATAGGCACAAAAATAATTCCACAGCATATAAGGTCTCACAAACAGACTGATCTTGAAAGAGCAAAGGCTACACTGTTGTTAGCATCACTGCCTAAGTCTTTACCTTGTAGAAATAAAGAAATGGAGGAGATAACTACATTTATTAAAGGTGCTATTTCTGACGATCAATGTTTGGGACGTTGCCTATACATTCATGGTGTTCCCGGAACTGGCAAGACAATGAGTGTATTATCAGTAATGAGGAGTTTGAGGTCAGAAGTTGATGCAGGAAACATCAAACCCTACTCTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCAGAAAATATTTATAGGGTCATATATGAGGCATTAAATGGACACAGGGTCAGCTGGAAAAAGGCTCTCCACCTACTAAATGAGAGGTTTGTAGAAGGGAAGAAAACAGGAGAAGAGGCTGACAGGCCATGTATTTTGCTAATTGATGAACTTGATCTTCTTGTGACCAGAAACCAGTCGGTTTTGTACAATATTCTTGATTGGCCTACTAAGCCACATTCCAAGCTAATTGTGATAGGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTAGCCCATATAATTATCAGCAACTTCAAGAAATCATTTCGAGCCGCCTCAAGGGAATTGATGTATTTGAAAAGCAAGCTATAGAATTTGCTTCAAGAAAGGTTGCAGCAGTCTCAGGAGATGCACGTCGTGCTCTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTATCGTATGAAGGAGCTAACTTCAAATACTGATTTTGTTGCTGCAGCTTCTCTTTTATGCATGAATTCCTTCTGA 2232 0.4234 MAATPTKSFQSPSKPYLRSQTNAKSTPAVTPVTPQSLPLHRSTRSKSLDFYSPKPPHESCENQLGTPKSRKARENLDQPRSRRSIDYTKDFGKDKVTTRTNATRGNVNASVEGSKKRNGKGSVEVSFAPASPDQLETKKRKREGERTVVTRALAARKGKSENRQKNVELPKCRTYYKKVVYDGGEFEVGDAVYVKRREDATSDDEDPEVEECRLCFCSGNEIMIECDDCLGGFHLKCMKPPLKDVPEGDWICGFCEARKMGREVNFPKPPRGKKLVRTMRQKLLSSDLWAAHIESIWKEVDGNYWCQVRWYTIPEETSVGRQPHNLSRELYRTNDFADIEMESVLRHCYVMTPKEYAKAKDEGDDIFFCEYEYDIHWHSFKRLADIDNERENGEETDSDEDWNVDKESDSDTDEDVEYEEENIKNAQSQPSTSHQLAANLHKGRFFGLQKIGTKIIPQHIRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEITTFIKGAISDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGNIKPYSFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFSPYNYQQLQEIISSRLKGIDVFEKQAIEFASRKVAAVSGDARRALEICRRAAEIADYRMKELTSNTDFVAAASLLCMNSF. 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00225 743 Pfam BAH domain 292 381 IPR001025 GO:0003682
Seca6g00225 743 MobiDBLite consensus disorder prediction 1 49 - -
Seca6g00225 743 MobiDBLite consensus disorder prediction 98 115 - -
Seca6g00225 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 272 IPR013083 -
Seca6g00225 743 MobiDBLite consensus disorder prediction 67 97 - -
Seca6g00225 743 FunFam Origin recognition complex subunit 1 275 467 - -
Seca6g00225 743 MobiDBLite consensus disorder prediction 390 432 - -
Seca6g00225 743 Pfam PHD-finger 215 257 IPR019787 -
Seca6g00225 743 Gene3D - 661 736 - -
Seca6g00225 743 ProSiteProfiles BAH domain profile. 268 384 IPR001025 GO:0003682
Seca6g00225 743 MobiDBLite consensus disorder prediction 1 146 - -
Seca6g00225 743 Gene3D - 464 660 IPR027417 -
Seca6g00225 743 FunFam Origin recognition complex subunit 1 465 664 - -
Seca6g00225 743 Pfam AAA lid domain 686 719 IPR041083 -
Seca6g00225 743 SUPERFAMILY FYVE/PHD zinc finger 200 261 IPR011011 -
Seca6g00225 743 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 316 727 - -
Seca6g00225 743 SMART BAH_4 243 384 IPR001025 GO:0003682
Seca6g00225 743 FunFam Origin recognition complex subunit 1 661 743 - -
Seca6g00225 743 SMART PHD_3 214 256 IPR001965 -
Seca6g00225 743 FunFam Origin recognition complex subunit 1 207 274 - -
Seca6g00225 743 ProSiteProfiles Zinc finger PHD-type profile. 209 258 IPR019787 -
Seca6g00225 743 SMART AAA_5 508 662 IPR003593 GO:0016887
Seca6g00225 743 ProSitePatterns Zinc finger PHD-type signature. 212 255 IPR019786 -
Seca6g00225 743 MobiDBLite consensus disorder prediction 390 420 - -
Seca6g00225 743 Gene3D - 155 401 IPR043151 -
Seca6g00225 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 721 IPR027417 -
Seca6g00225 743 Pfam ATPase family associated with various cellular activities (AAA) 513 658 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00225 Seca-Chr6 5383570 5391490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00225 4 737 Core DNA Replication Machinery Family AT4G14700 58.611 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca6g00225 AAA 4.3e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00225 K02603 - gmx:100798547 1206.82