Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00219 ATGGGTAGGGGGAAGATTGAGATCAAAAGGATTGAGAATGCTAACAGCAGACAAGTTACATTCTCCAAAAGGAGAACTGGGTTGCTCAAAAAGGCTCAGGAGCTGGCCATTCTCTGCGATGCTGAGGTTGCTGTTATCATCTTCTCCAACACAGGGAAGCTGTTCGAGTTTTCGAGTTCTGGTATGAAGCGAACACTTCAAAGATACAACAAATGCATGGATTCTTCAGAGGTAGCAGTAGCAGAACATAAAACAGAGTTTTTTCTTCAGAAGGAAGATTCTAAGATGCTGGAGATTCTTAAAGATGAAATTGCAAACCTAGAAACAAAGCAATTACAGCTGTTGGGTAAAGACCTAACAGGATTGGGCTTAAAGGAACTGCAACATCTAGAGCAGCAACTTAATGAAGGGTTATTGTCTGTCAAGGAGAGGAAGGAGGAATTACTTATGGAGCAACTGGAGCAATCAAGAGTACAGGAGCAGAAGGCTATGCTGGAGAATGAAACTTTGCGGAGACAGGTTGAGGAGCTCCGTTGTTTGTTTCCATTATCAGAGCATGTAGTCCCAACTTATCTTCCATTCCACCATATGGAAAGAAAGAGTGCCTTTGTAGATAATGGTGTTAAATGTCCCAACTTGGTCAGTAACTGTGCAAATGAGAAAGGAGATTCAGACACTGCATTGCATTTAGGGTGGCCAACTGATGTTCATCACAAGAGGAAGGGACCTGAGAAAGAAAACTTTTCTAATGATTCATAG 759 0.4203 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLQRYNKCMDSSEVAVAEHKTEFFLQKEDSKMLEILKDEIANLETKQLQLLGKDLTGLGLKELQHLEQQLNEGLLSVKERKEELLMEQLEQSRVQEQKAMLENETLRRQVEELRCLFPLSEHVVPTYLPFHHMERKSAFVDNGVKCPNLVSNCANEKGDSDTALHLGWPTDVHHKRKGPEKENFSNDS. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00219 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca6g00219 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca6g00219 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca6g00219 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca6g00219 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca6g00219 252 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Seca6g00219 252 MobiDBLite consensus disorder prediction 232 252 - -
Seca6g00219 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca6g00219 252 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Seca6g00219 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Seca6g00219 252 Pfam K-box region 95 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca6g00219 252 Coils Coil 90 117 - -
Seca6g00219 252 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca6g00219 252 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Seca6g00219 252 MobiDBLite consensus disorder prediction 228 252 - -
Seca6g00219 252 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Seca6g00219 252 Coils Coil 153 180 - -
Seca6g00219 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00219 Seca-Chr6 5222344 5226714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00219 1 252 MADS-box Gene Family AT5G13790 55.731 8.72e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca6g00219 K-box 8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00219 - - zju:107417456 351.288