LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g00217	ATGTCCAGCAATGAAGAAACATATGTGTCTCTCAAAAATCTATCCACCACCTCAGATAATCTGAATATAAAAGTGCGGATTTCACGTATATGGGACACACTTAACATACATCGAAAGAAAGAATTAATTAGCACAGACATGGTGCTAATTGATGAAAAGAGCAATTACATACATGCTTCTATAGGGAGAAATATTGCTCATAAGTTAAAGCCTCTTCTAAAAGAAGGAAGAATTTACACCGTTAAAAATTTTGAGGTGACAAATAATAAAGAAAAATTTCCAGTGATCCAAAAGAACTCTTCAATGTTACATTTTTGTGCCACAACAATTGTGAAAGAAGTAGGCCATGATGAAAGCATCATCCCTCACCATGTTTTTGAATTTGTTAATCTTGATGATTTACAAAGTCGGTGTGGAAAGGATGTCTTGACTGATGTGATTGGAGTAATCACCAAAGTTGGTCCAATTGAGGAGAAGAGAACTATTGGAGGCAATGTTGATACCTTGACACTTCACTTACAAGACATAAGGGGAAATAGGGTTAAAGTGACAATATGGGATGAATATGTAAAGCTATTTGAGCAGAAATTGAAAGAATATGTGTCTAAAGATCCTCAAGTCACTGTTGCAATTTTCACATCAACTATAATTAAAAAATTTCGAGGTGAATTGTCTATTTCCACATCAAGATCAACAAATATTTATGTCAACATAGACATACCAGAATCTAATGAGCTCATACAATCATTCAAGGATTCAAGTGATGAACCTATAGTTGGTAACTTTGAAGTGTCAAAGAATGGTGTCTCTCCTAAAACAGTGAAGACTATAGCTGAACTTCTCTCCATGGCAAGTTTAAAGAGTAATATGAATGATGTGTATTCTTGTGCTGCTACTGTGAACGATATCTTGCTGAAAAATGGATGGAATTATGTTTGTTGCCCTCATTGCAAAAAAATGGCTGATAAGACAACTACAAATTTCAATTGTCAACATTGTCACAAAATTGTTGAGTATCCAATGACAAGGTTGCGTTTGGAGCTTGATGTCAAAGATTCTACAGATTCTACCATATTTGTTCTGTTTCATGAAGTTGCTGAACAATTAACACATTTGAACTTAGGCGACCATGCCACAACCTTTGAAAATGAAAATGGTGATGACTTGAACTTGCCACCCCAACTACTAAAAATCATAGGTACTACCCATGTCTTCCAAATAAAAATGAGCACCTATTTTGAAAGCTATGGAAGGCGCAGTTTCACGGCAAATAAAATTCTCAAGTCAGTTGTTAAGATTGAGGACGAAGATACGACAGACACCTCAGGTGCCAAATCAAAGGAAAATACATTGGAAAATACTGCTTCTTCCTCAAATGGATCTTCAGATACAAAAAAAAAAAAAATTCACCACAAAAGAAGAGAAAGTTAA	1431	0.3494	MSSNEETYVSLKNLSTTSDNLNIKVRISRIWDTLNIHRKKELISTDMVLIDEKSNYIHASIGRNIAHKLKPLLKEGRIYTVKNFEVTNNKEKFPVIQKNSSMLHFCATTIVKEVGHDESIIPHHVFEFVNLDDLQSRCGKDVLTDVIGVITKVGPIEEKRTIGGNVDTLTLHLQDIRGNRVKVTIWDEYVKLFEQKLKEYVSKDPQVTVAIFTSTIIKKFRGELSISTSRSTNIYVNIDIPESNELIQSFKDSSDEPIVGNFEVSKNGVSPKTVKTIAELLSMASLKSNMNDVYSCAATVNDILLKNGWNYVCCPHCKKMADKTTTNFNCQHCHKIVEYPMTRLRLELDVKDSTDSTIFVLFHEVAEQLTHLNLGDHATTFENENGDDLNLPPQLLKIIGTTHVFQIKMSTYFESYGRRSFTANKILKSVVKIEDEDTTDTSGAKSKENTLENTASSSNGSSDTKKKKIHHKRRES.	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g00217	476	SUPERFAMILY	Nucleic acid-binding proteins	126	251	IPR012340	-
	Seca6g00217	476	SUPERFAMILY	Nucleic acid-binding proteins	274	424	IPR012340	-
	Seca6g00217	476	Gene3D	-	121	257	IPR012340	-
	Seca6g00217	476	CDD	RPA1_DBD_B_like	145	251	-	-
	Seca6g00217	476	MobiDBLite	consensus disorder prediction	434	476	-	-
	Seca6g00217	476	CDD	RPA1_DBD_A_like	23	93	-	-
	Seca6g00217	476	Gene3D	-	259	440	IPR012340	-
	Seca6g00217	476	MobiDBLite	consensus disorder prediction	444	462	-	-
	Seca6g00217	476	CDD	RPA1_DBD_C	277	437	IPR047192	-
	Seca6g00217	476	PANTHER	OS03G0429900 PROTEIN	8	459	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Seca6g00217	476	Gene3D	-	6	113	IPR012340	-
	Seca6g00217	476	Pfam	Domain of unknown function DUF223	47	115	IPR003871	-
	Seca6g00217	476	SUPERFAMILY	Nucleic acid-binding proteins	7	115	IPR012340	-
	Seca6g00217	476	Pfam	Replication protein A OB domain	138	237	IPR031657	-
	Seca6g00217	476	Pfam	Replication factor-A C terminal domain	294	419	IPR013955	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g00217	Seca-Chr6	5210944	5213195	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g00217	9	409	Core DNA Replication Machinery Family	AT4G19130	22.947	1.10e-19	90.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g00217	-		-	mtr:120580096	460.685