Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00215 ATGCTTATATTTTATATATATATAAATCCCCTAAGTCCTATATTATCATTCTGTTCTCACCTTCCTAATTTCCTTGCCATTCTCTCAACAAACATAATGGGCAGAGTGGCAAGTTGTTCTGTTCTTCTATCATTTCTCATTCTTTCATTCTTTGTGATTGAAATCCATGGAAGTAATAGACAAGTTAAGGCTCTTGACAAACTTCAAAAGTCAAAATTCAGAGGAAGTTCAGAAATTGATGTGAGTGAGTTTGAGGTACAAGAGGTTGTCCCTGATGCCATTGTTCATTCTCAAGAAGGACTGAAAGAGAAAGCTAGGATTGAGAAGCTTCCAGGACAACCCCATGTGAGGTTTTCTCAGTATGGAGGGTATGTCACTGTAGATAAATTGGCTGGCAGTGCCTTTTACTATTACTTTGTTGAAGCTCAACATTCCAAAGAAACAAAGCCTCTTCTTCTTTGGCTCAATGGAGGTCCTGGATGTTCATCACTAGCCTATGGAGCAATGCAAGAACTTGGACCCTTTAGAGTAAACAGTGACGGCAAAACACTATACAGAAATAGATATTCATGGAACAATGTTGCAAATGTTCTGTTCCTGGAGTCACCTGTTGGAGTGGGATTTTCTTACTCAAACAGATCATCAGATTATAATGTGAATGGAGATAAGAAAACAGCTGCAGATAACTACTTGTTCTTGTTAAATTGGTTGGAGAGGTTTCCGGAATATAAGAATAGAGATTTCTATATTTCTGGGGAGAGTTATGCTGGCCATTATGTTCCTCAACTTGCACATACTATTCTCTATCATAACAAAAAGGCAAAAAAGACTATCATCAACCTCAAAGGAATCATGATTGGGAATGCAGTGATCAATGATGACACAGACTCTCAAGGATTGTATGATTATCTTGCAAGCCATGCAATAATCTCAGACCAAGCAGCATATGATATCACCAAAGCTTGTGATTTCTCAGCACGTAATCAGACAAAGGAGTGCCATGAAGCCGCTGATGAATTTGACAGTGATATTTCATTCATTGATTTATACAACATTTATGCTCCACTTTGCAAAAATTCCAATCTCACTGCCCGGCCCAAGAAGACCTCTGTAACCTTCAAATCTCAATCCTTATTTTTTTTATTTTTATTATTAATGCTTGTGATTGATCCATGTAGTGAGTATTATGTGTATGCATATCTTAATAGAGGAGATGTTCAAGAGGCCCTTCATGCCAATGTCACTAAGCTCAAATATGACTGGGAACCCTGCAGTGATGTCATTCAAAATTGGGTTGATAGCGCTTCAACAGTCCTTCCTCTTTTACATGAATTCCTCAATAATGGCCTTAGAGTTTGGGTTTTCAGTGGTGACACAGATGGAAGGGTACCTATTACTTCAACAAAGTATTCAATTAACAAGATGAAGCTTCCCATTAAAACTGCTTGGCACCCTTGGTTTGCGTATGGAGAGGTTGGTGGGTATGCAGAAGTATACAAGGGAGGCCTAACACTTGCAACAGTGAGAGATGCAGGGCATCAAGTGCCAAGTTACCAACCAGCAAGAGCCCTTGTTTTGATCAAAAGTTTCTTAGATGGCACTCTTATTTCTAATCCCAAAACACATGCTTAG 1632 0.3873 MLIFYIYINPLSPILSFCSHLPNFLAILSTNIMGRVASCSVLLSFLILSFFVIEIHGSNRQVKALDKLQKSKFRGSSEIDVSEFEVQEVVPDAIVHSQEGLKEKARIEKLPGQPHVRFSQYGGYVTVDKLAGSAFYYYFVEAQHSKETKPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGKTLYRNRYSWNNVANVLFLESPVGVGFSYSNRSSDYNVNGDKKTAADNYLFLLNWLERFPEYKNRDFYISGESYAGHYVPQLAHTILYHNKKAKKTIINLKGIMIGNAVINDDTDSQGLYDYLASHAIISDQAAYDITKACDFSARNQTKECHEAADEFDSDISFIDLYNIYAPLCKNSNLTARPKKTSVTFKSQSLFFLFLLLMLVIDPCSEYYVYAYLNRGDVQEALHANVTKLKYDWEPCSDVIQNWVDSASTVLPLLHEFLNNGLRVWVFSGDTDGRVPITSTKYSINKMKLPIKTAWHPWFAYGEVGGYAEVYKGGLTLATVRDAGHQVPSYQPARALVLIKSFLDGTLISNPKTHA. 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00215 543 ProSitePatterns Serine carboxypeptidases, serine active site. 250 257 IPR018202 GO:0004185
Seca6g00215 543 Gene3D - 392 429 - -
Seca6g00215 543 FunFam Carboxypeptidase 101 359 - -
Seca6g00215 543 Pfam Serine carboxypeptidase 112 533 IPR001563 GO:0004185|GO:0006508
Seca6g00215 543 FunFam Carboxypeptidase 438 533 - -
Seca6g00215 543 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 106 520 IPR001563 GO:0004185|GO:0006508
Seca6g00215 543 Gene3D - 438 533 - -
Seca6g00215 543 PRINTS Carboxypeptidase C serine protease (S10) family signature 200 210 IPR001563 GO:0004185|GO:0006508
Seca6g00215 543 PRINTS Carboxypeptidase C serine protease (S10) family signature 236 261 IPR001563 GO:0004185|GO:0006508
Seca6g00215 543 PRINTS Carboxypeptidase C serine protease (S10) family signature 503 516 IPR001563 GO:0004185|GO:0006508
Seca6g00215 543 PRINTS Carboxypeptidase C serine protease (S10) family signature 187 199 IPR001563 GO:0004185|GO:0006508
Seca6g00215 543 SUPERFAMILY alpha/beta-Hydrolases 105 536 IPR029058 -
Seca6g00215 543 ProSitePatterns Serine carboxypeptidases, histidine active site. 503 520 IPR033124 GO:0004185
Seca6g00215 543 Gene3D alpha/beta hydrolase 102 359 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00215 Seca-Chr6 5170466 5174610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00215 400 533 Calmodulin-binding Proteins AT2G22960 28.358 5.87e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00215 K16297 - gmx:100783864 780.4