Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00197 ATGCCATTTAGATCAATTGCACTGTGTTTGGCTTGGACCTTCAACACTGCTGAGGAAGCTGCAAGAGCTTATGATTCTGAAGCTAGGAGGATCCGTGGTAAGAAAGCCAAGGTGAACTTCCCTGATGGGGCTGCTGGTTCTTCCTCCAAACGTGTCAAGGCCAATCCACAGAAGGAAAATGTTAACTCTGTTAAGCCCAAATTGAACAAGATGTTCAATTTTGGTGACAACATGGAGGAATACTACTCCTCTATGGATCAGATGGAACAAAAGCAAGTGGTTAACCAGTATGCTAACATGGGCCCCTTCCCTGGAAATGGACTTCAGCTCTCATCCCTTGCTCCATCTACTGATGTCACCCCTTATTTTAGCTCAGAGAATTCAAGCAATTCATTTGATTATTCTGATCTTGGATAG 417 0.4388 MPFRSIALCLAWTFNTAEEAARAYDSEARRIRGKKAKVNFPDGAAGSSSKRVKANPQKENVNSVKPKLNKMFNFGDNMEEYYSSMDQMEQKQVVNQYANMGPFPGNGLQLSSLAPSTDVTPYFSSENSSNSFDYSDLG. 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00197 138 ProSiteProfiles AP2/ERF domain profile. 1 41 IPR001471 GO:0003700|GO:0006355
Seca6g00197 138 PANTHER DNA-BINDING DOMAIN 13 83 IPR044808 GO:0003700|GO:0009873
Seca6g00197 138 MobiDBLite consensus disorder prediction 39 60 - -
Seca6g00197 138 SUPERFAMILY DNA-binding domain 13 42 IPR016177 GO:0003677
Seca6g00197 138 Gene3D AP2/ERF domain 9 42 IPR036955 GO:0003700|GO:0006355
Seca6g00197 138 SMART rav1_2 12 47 IPR001471 GO:0003700|GO:0006355
Seca6g00197 138 MobiDBLite consensus disorder prediction 105 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00197 Seca-Chr6 4793481 4793897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00197 2 59 AP2-EREBP Transcription Factor Family AT1G72360 53.448 6.05e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00197 K09286 - gmx:547957 187.193