Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00189 ATGAAGAGATTGAGGTCGAGCGACGATCTCCACTCGTACGGTGATAAGAATGCCTGCAAGGATTCGAATCTGAATCGGTCCTTTTCTTCTTCTGCGCAGCGAAACTTTTACTACAAACCTGATAATGTGCGCAAGGGTTTGCTCTCTTCCTCGTCTTCACGCTACGACAGGGATCGGACGGTGGACGAGGATCGAGAGGCTTCGAGGTTGGTTCGTAAGCGATCGGAGCATGATTTCGAGGGTTTTGATCGGAGGAAAGGTTTCGATCGGTATAGGGATGGTGGTTATGGCAGTGGAGGAGGGGATAGGAGTTTGATTCACCGGTCGGAGAGTTTCTGTGGATCTAGGAGGGAGTTTCCGAAGGGGTTTCGGTCGGAGAGGGACCGTTCGCGAAGGGAGGGAAGCGTGTCCTCGTGGAGAAGAGGGTTGAAGGATTTTGATGAGAGTGGTAGTAGAGGGAATAGAGTTGTTGGAGGCGTGGAGGAGAGAGTAGTTAGGTCTCCAAAGGGTTTGAGGGATGTGAAGTCTCCTACACGGTCGAAGGATTCTGAGAGTGAGCAATCTAAGAAGAGATCTTCTTCTCCTCCGAGAGGAGGGTTCAGAGATGCGAAGTCCAAGTCGAAGTCACCCTCTTGGTCTAAGGATTCGGAGAGCGAGCAGTCCAAGAGTGTCGAGGTGAAGAAAACTGAGGAGTTGCAGGTTCAGAGTGGTGGAACTGGAAGCAGTAGTGAAATGGAAGAGGGGGAGCTGGAACCTGAACCCGTACCTCAAACTGAACCACCCACTGAACCTGAAGCGGTTCCAAGAGATGCCTCAAAAGATGCCCCTGAAAGTGAAGATCAGCCCTCCGTCCCTTTGGAAACTGATGATAAACAAGTTCAGAATGAAAGCCACCTCAATGACACAGATACTGCTATGGAAGAAAGACAGGAGGAAATATCTAGTAAGCAAGAGGTAAAACCTGATGAGGACATTGATCCTGAAGTAAAAGATGCAGGAAAAGAAGCTGATAAGCTGCCAGATATTCCAGATGATCCAACCGAGAAAATGCTTGTTACTGAGACTGAACTTGACACCTTGGGTAAGGATGATGAGAAAAAAGACGTGTGTTTGAAAGCGGATACTCAGTGCAAGGAGGAAGCCGAGAATGTGGCTGATAAGGAGAAGGTCTTGTTTAATGAAGAAAAGCACAAGCATGGCAAGGGTGTAGATCTTGTAACCAGGGCAGTTGCTAGCAAACCTGAGTTAAATGATGAAGTCTCAACAGAAAATGAAGTTCCCAAAGAAGAAAATAGAGAGATGATAATGGAGAGTGTGACCAACAGTGCAAAGGATAAAGGCAAAAGCATTTCTGTTGCAGCTACTGATGTTGCTCATCCTTCAGAAGTTGTCTTATGGATTGATAGAGAATCAAGAGATCTGGCAACATGCTCTGCTGATGTCATGGAAGGTCCAAGCACAAGAGGATTTGAGTTGTTTTCTAGATCTCCTGTGAGAAAAGTGGAGAAATCAGACCACTCAGTTCTCAATAAGCAAAAGGATGACAGTCTTGCAATGGAGCAGCTTGATCTTACTCTTAGTTTGCCAAATGTTCTGTTACCTATTGGTGCTCATGAGACAACAACACAAGCCCCTGGATCTCCCAGTCAGGCACGGAGTGTGCAGTCTTTAAGTAATACATTTTGTACTAACTCAGATGGTTTTACTGCATCCATGTCATTTTCAGGTTCCCAATCATTCTATCACAATCCAAGCTGTTCTCTAACAAAAAATTCAGTGGACTATGAGCAATCTGTTGGCAGTCGGCCCTTATTTGGGGGAATAGATTGGCAAGGCCAGTCTCAGAATGATCCCAAACAGAAAGAAGTTCCTTTTGGTCAGAGAACTTCTATGAATGGAAATGGTTCCTTTTACCAGTCTCAAGCATCATGGGGCGTTTTAGATGGTCAGGCTGTGAAAGGTCAACATTCTAGGGTTCTAGAAGGGAGCTCAAAAATGGGCAGTGGACTTGACAAGCAGTTGAGTTTTCATAAGCAGCTATCAGGACAGTCAAGACGCCATGATGATGTTAGATCTCCTTCACAGAGTGTTGGGTCTCATGACATTGGATCAAATTATAGTTTTGAGAAAAAGAGGGAGGTTAGGGACAGGGGTAATGGCAGTCTGTATCGAACTACTAGCCAGAAGGAACAAGAACAACTTCTGATGGGTGGAGTTGATTTTGTTGAGACAATCATTGCAAGAATAGTTTCTGAACCCGTGCATGCAATGTCCAGAAAGTTCCATGAAATGACTGGACAATCCATAGCATGTCTGAAAGAGGGTATTCGAGAAATCATGCTCAATACAGATAAGCATGGGCAGATACTTGCTTTTCAAAAAGTTCTGCAGAACAGGTCAGATATAACCTTGGATGTCCTACTGAAGTGCCACCGAGTGCAACTAGAAATTTTGGTTGCTTTGAAAACAGGGTTAACTCAGTTTCTTCACTTAGATGACAGCATTTCATCTTCTGATTTAGCTCAAGTTTTTCTGAGCTTGAGATGTAGAAATCTTTCATGTCGAAGTCAGTTACCTGTAGATGAATGTGATTGCAAGGTTTGTGTGCAAAAGAATGGTTTTTGCAGGGAGTGTATGTGTCTTGTGTGTTCCAAGTTTGACAATGCGTCAAATACATGTAGTTGGGTTGGGTGTGATGTCTGCCTTCATTGGTGCCATACTGATTGTGGATTGCGAGAATCTTATATTAGAAATGGACATAGTACTACTGGGACAAAAGGGATGACTGAGATGCAGTTTCACTGTATTGCTTGTGATCATCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCATAATTTTGCAAAAGAATGGTCAGTTGAAACTCTTTGCAAGGAGCTTGAATATGTGAAGAGAATTTTTTCTGCCAGCAAGGATATGAGAGGGAGACAGTTGCATGAGATTGCAGATCAAATGCTACCAAGGTTGGCGATCAAGTCTAACCTTCCTGAGGTTTTGAGACACATCATGTCTTTCCTTTCTGATTCTGATTCTTCCAAATTAGCCATGCCAACAAACTTTTCTGGGAAGGAACATGTAAAAGAAAACAATGGGGTAGCTGGGCCCAGCCAGGAAGCTGCTTGGCTGAAATCTATTTACTCAGAAAAGCCACCTATGTTAGAAAGGCCTGCAAATATCCTTCCTAGCTTTGATCACAATGATAAAAGGTCTCTTGCGCAAGAGTTGCAGATGAGCATTGCCCAAAAGGACTTGTGTTTTGATGAATTGGAGAGTGTAGTGAAAATCAAACAGGCAGAGGCTAAAATGTTTCAATCTCGTGCTGATGATGCTAGAAGAGAAGCTGAAGGGTTGAAACGCATTGCCCTTGCAAAGAATGAGAAAATTGAAGAAGAGTATACCAATCGAATTGCCAAGTTGCGATTGGCTGAGACTGATGAAATGCGTAAACAAAAATTTGAAGAACTCCAAGCATTAGAGAGGGCACATCTGGAATATTTGAACATGAAAAGGAGAATGGAGGCAGACATTAAAGATCTTTTATCCAAAATGGAAGCTACTAAAATGAGCCTTGCCATGTGA 3603 0.4374 MKRLRSSDDLHSYGDKNACKDSNLNRSFSSSAQRNFYYKPDNVRKGLLSSSSSRYDRDRTVDEDREASRLVRKRSEHDFEGFDRRKGFDRYRDGGYGSGGGDRSLIHRSESFCGSRREFPKGFRSERDRSRREGSVSSWRRGLKDFDESGSRGNRVVGGVEERVVRSPKGLRDVKSPTRSKDSESEQSKKRSSSPPRGGFRDAKSKSKSPSWSKDSESEQSKSVEVKKTEELQVQSGGTGSSSEMEEGELEPEPVPQTEPPTEPEAVPRDASKDAPESEDQPSVPLETDDKQVQNESHLNDTDTAMEERQEEISSKQEVKPDEDIDPEVKDAGKEADKLPDIPDDPTEKMLVTETELDTLGKDDEKKDVCLKADTQCKEEAENVADKEKVLFNEEKHKHGKGVDLVTRAVASKPELNDEVSTENEVPKEENREMIMESVTNSAKDKGKSISVAATDVAHPSEVVLWIDRESRDLATCSADVMEGPSTRGFELFSRSPVRKVEKSDHSVLNKQKDDSLAMEQLDLTLSLPNVLLPIGAHETTTQAPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSFYHNPSCSLTKNSVDYEQSVGSRPLFGGIDWQGQSQNDPKQKEVPFGQRTSMNGNGSFYQSQASWGVLDGQAVKGQHSRVLEGSSKMGSGLDKQLSFHKQLSGQSRRHDDVRSPSQSVGSHDIGSNYSFEKKREVRDRGNGSLYRTTSQKEQEQLLMGGVDFVETIIARIVSEPVHAMSRKFHEMTGQSIACLKEGIREIMLNTDKHGQILAFQKVLQNRSDITLDVLLKCHRVQLEILVALKTGLTQFLHLDDSISSSDLAQVFLSLRCRNLSCRSQLPVDECDCKVCVQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHSTTGTKGMTEMQFHCIACDHPSEMFGFVKEVFHNFAKEWSVETLCKELEYVKRIFSASKDMRGRQLHEIADQMLPRLAIKSNLPEVLRHIMSFLSDSDSSKLAMPTNFSGKEHVKENNGVAGPSQEAAWLKSIYSEKPPMLERPANILPSFDHNDKRSLAQELQMSIAQKDLCFDELESVVKIKQAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYTNRIAKLRLAETDEMRKQKFEELQALERAHLEYLNMKRRMEADIKDLLSKMEATKMSLAM. 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00189 1200 MobiDBLite consensus disorder prediction 705 719 - -
Seca6g00189 1200 MobiDBLite consensus disorder prediction 608 634 - -
Seca6g00189 1200 Pfam PHD - plant homeodomain finger protein 849 972 IPR032881 -
Seca6g00189 1200 MobiDBLite consensus disorder prediction 85 349 - -
Seca6g00189 1200 CDD PHD_OBE1_like 879 938 IPR047578 -
Seca6g00189 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 760 782 IPR004082 -
Seca6g00189 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1095 1115 IPR004082 -
Seca6g00189 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 886 906 IPR004082 -
Seca6g00189 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 959 978 IPR004082 -
Seca6g00189 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 840 861 IPR004082 -
Seca6g00189 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1134 1156 IPR004082 -
Seca6g00189 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 799 814 IPR004082 -
Seca6g00189 1200 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 814 829 IPR004082 -
Seca6g00189 1200 MobiDBLite consensus disorder prediction 43 70 - -
Seca6g00189 1200 MobiDBLite consensus disorder prediction 1 26 - -
Seca6g00189 1200 MobiDBLite consensus disorder prediction 109 151 - -
Seca6g00189 1200 MobiDBLite consensus disorder prediction 604 634 - -
Seca6g00189 1200 MobiDBLite consensus disorder prediction 51 70 - -
Seca6g00189 1200 MobiDBLite consensus disorder prediction 677 719 - -
Seca6g00189 1200 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1197 IPR004082 -
Seca6g00189 1200 MobiDBLite consensus disorder prediction 1 16 - -
Seca6g00189 1200 Pfam Coiled-coil region of Oberon 1073 1188 IPR032535 -
Seca6g00189 1200 MobiDBLite consensus disorder prediction 291 349 - -
Seca6g00189 1200 Coils Coil 1101 1139 - -
Seca6g00189 1200 Coils Coil 1149 1197 - -
Seca6g00189 1200 MobiDBLite consensus disorder prediction 165 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00189 Seca-Chr6 4624271 4629885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00189 849 997 PHD Gene Family AT5G57380 27.517 4.16e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00189 - - gmx:100817003 1704.49