Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00186 ATGTTGGTAGTCCATTACAGGGCGTGGTCTGAGAGCACGCAGCACAAGTTTGAAGACACATGGGAGGAGCAACGACCAATTGAGATGGTATTAGGAAAAGTGTGGCTAGCATCTTCTATAGAAGAAAGAAATGACTGGCTTGGGATTGGTGTGGCCAGCATGAAAGCTGGGGAGTGGGCATTGCTGTGGGTGGGCTGGGAATTAGGATATGGAAAAGAAGGAAGCTTTTCTTTTCCAAATGTTCCACCCATGGCAGATTTAGTTTATGAAGTCGAGTTCATCGGCTTTGATGAAACAAAAGAAGGAAAAGCTCGCAGTGATATGACTGTAGAGGAGAGGATTGGTGTTGCAGGAGATTACTTCATGTTCCAATTGTTTGGGAAGTATAGAGATATGGCTCTAGCGATAAAGAATCCATGCCATCTTAACATGGCAACCTGTTTAATTAAGCTGAACCGCTATGAAGAAGCTATAGGACAATGCAGCATTGTACTGAGTGAGGATGAGAATAATGTCAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGACAAATAGATGCTGCCAAGGAAGATTTCCTGAAAGCACATAAGTATGCCCCTGAAGATAAAGCAATTGCAAGAGAATTGAGGCTGCTTGTTGAACATGACAAGGCTGTTAACCAAAAGCAAAAAGAGATCTATAAAGGAATATTTGGACCAAGGCCTCAACCAGTACCCAAGAGAAGGAATTGGCTAATACTTATTTGGCAGTGGTTGCTTTGA 771 0.4306 MLVVHYRAWSESTQHKFEDTWEEQRPIEMVLGKVWLASSIEERNDWLGIGVASMKAGEWALLWVGWELGYGKEGSFSFPNVPPMADLVYEVEFIGFDETKEGKARSDMTVEERIGVAGDYFMFQLFGKYRDMALAIKNPCHLNMATCLIKLNRYEEAIGQCSIVLSEDENNVKALFRRGKARAALGQIDAAKEDFLKAHKYAPEDKAIARELRLLVEHDKAVNQKQKEIYKGIFGPRPQPVPKRRNWLILIWQWLL. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00186 256 SMART tpr_5 172 205 IPR019734 GO:0005515
Seca6g00186 256 SMART tpr_5 138 171 IPR019734 GO:0005515
Seca6g00186 256 Gene3D Tetratricopeptide repeat domain 115 200 IPR011990 GO:0005515
Seca6g00186 256 SUPERFAMILY FKBP-like 2 103 - -
Seca6g00186 256 Gene3D - 1 98 IPR046357 GO:0003755
Seca6g00186 256 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1 97 IPR001179 GO:0003755
Seca6g00186 256 SUPERFAMILY TPR-like 139 233 IPR011990 GO:0005515
Seca6g00186 256 Pfam Tetratricopeptide repeat 173 205 IPR013105 -
Seca6g00186 256 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 122 243 IPR039663 -
Seca6g00186 256 ProSiteProfiles TPR repeat profile. 172 205 IPR019734 GO:0005515
Seca6g00186 256 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 3 94 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00186 Seca-Chr6 4568313 4571397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00186 45 234 Calmodulin-binding Proteins AT3G25230 31.507 1.24e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00186 - - gmx:100790587 421.009