Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00182 ATGTCAATGAAAAGCATAGTTCGTGAACTCAAGGAGATCAGAGATGGAATAGGTAGCATATCAAGGCGGGGTGGAGAAAGTAGGCATTGGCTCAGTAGGACAAAGTCACACGTTGCTCCGGATGTCCTTGTAACTCCATTTGAACCTATTCAACAGGGACAATGGGCAAATCTACCGCCAGAATTGCTTTCGGACATAATCCGAAGGGTTGAAGAGAGTAAGACATCTTGGCCTGCAAGGGTTGTGGTTGTTTTTTGTGCTTCACCTGGTCCTCGTGATTCTCCAATACAGTGCTTCATCAGGAGGAATAGAGAAACTTCTACATATCTATTGTACTTTGGCCTGGTGCCATCGGAGAATGAGGGTAATAAGTTGTTATTAGCTGCCAAAAATATAAGAAGGGCAACGGGAAAGAAAAGATGA 423 0.4397 MSMKSIVRELKEIRDGIGSISRRGGESRHWLSRTKSHVAPDVLVTPFEPIQQGQWANLPPELLSDIIRRVEESKTSWPARVVVVFCASPGPRDSPIQCFIRRNRETSTYLLYFGLVPSENEGNKLLLAAKNIRRATGKKR. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00182 140 PANTHER TUBBY-RELATED 85 136 - -
Seca6g00182 140 SUPERFAMILY Tubby C-terminal domain-like 84 136 IPR025659 -
Seca6g00182 140 Gene3D Tubby Protein; Chain A 79 139 IPR025659 -
Seca6g00182 140 Pfam Tub family 88 136 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00182 Seca-Chr6 4533281 4534427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00182 1 136 TUB Transcription Factor Family AT2G18280 53.012 4.87e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca6g00182 Tub 3.6e-10 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00182 K19600 - gmx:100777506 222.246