Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00179 ATGATCAGGCCATCTTCCAAAGTCATTATCAAATTCCTTATGGTGATGCATAAGCATGGATACATTGGAGGGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATTATGGTTGAATTGAATGGTAGGTTGAATAAGTGTGGGGTTATTAGTCCCCATTTTGATGTGGGTGTCAAAGAGATTGAAGGTTGGATTGTTAGGCTTCTCCCCTCAAGACAGGTCAGTTAA 228 0.4079 MIRPSSKVIIKFLMVMHKHGYIGGFEYVDDHRAGKIMVELNGRLNKCGVISPHFDVGVKEIEGWIVRLLPSRQVS. 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00179 75 Pfam Ribosomal protein S8 4 59 IPR000630 GO:0003735|GO:0005840|GO:0006412
Seca6g00179 75 Gene3D - 1 44 - -
Seca6g00179 75 FunFam 40S ribosomal protein S15a 1 44 - -
Seca6g00179 75 SUPERFAMILY Ribosomal protein S8 2 73 IPR035987 GO:0003735|GO:0005840|GO:0006412
Seca6g00179 75 Gene3D - 45 75 - -
Seca6g00179 75 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 74 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00179 Seca-Chr6 4457950 4458325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00179 1 73 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 89.041 1.10e-44 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00179 K02957 - gmx:100799973 138.272