Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00169 ATGAAGATGAAGGGGGCACCGAAACTGGGGAGAAAGTTGGGAAAGTTTCGGACTTTAACGATGGTGGAAAAGTTTGCGATGAAGAATCTGCTAAGGGTGAAGTGTGTGATGGAGATAGCAGGGGTTGTGAGAGGTAATAGTTGGAATGAGAATGTGAATGAAGAGGTGGGTAGAGATGGAGATGGAGATGGAGATGTTGATGGGTATGGGGGTGTTGATGGTGATCGAGTGGAGGAGAAGGAAGAAAAAAGCAGGGGTAGAACTCGGCATTACCCTTTGTGGCCTGAAGCTGAAGATTGTGCATTCTACATGAAGAATGGGACTTGCAAGTTTGGGTTCAGTTGCAAGTTTAACCACCCCATTAGGAGGAAAAATCAGCTTAGAACACTCACCTGA 396 0.4596 MKMKGAPKLGRKLGKFRTLTMVEKFAMKNLLRVKCVMEIAGVVRGNSWNENVNEEVGRDGDGDGDVDGYGGVDGDRVEEKEEKSRGRTRHYPLWPEAEDCAFYMKNGTCKFGFSCKFNHPIRRKNQLRTLT. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00169 131 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 120 IPR000571 GO:0046872
Seca6g00169 131 MobiDBLite consensus disorder prediction 54 87 - -
Seca6g00169 131 PANTHER PROTEIN PHOSPHATASE RELATED 73 125 - -
Seca6g00169 131 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Seca6g00169 131 MobiDBLite consensus disorder prediction 52 87 - -
Seca6g00169 131 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Seca6g00169 131 Gene3D - 71 130 - -
Seca6g00169 131 SUPERFAMILY CCCH zinc finger 93 122 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00169 Seca-Chr6 4318110 4318972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00169 91 127 C2H2 Transcription Factor Family AT1G29570 51.351 1.83e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca6g00169 zf-CCCH 1.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00169 - - tpra:123882932 100.523