Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00164 ATGCGAGCTTCTAATAGCGTATTGCAGAGGCAGTACAGGAGTAGATTGACTCGTAAGTCTTTGGAGAGTAGCATGACGTCTTTGGCTTCAGAAGGTTCTTTAAGCTTCAACAGATTCTATCCTTCAGAGAGTCTGATCATTTCCAGAAGTTTGACCTTCTTCAGCAAGTTCTTTTCTTCAGTTGGTTGCTGCACTGTTCTTTCTTTAGAATGTTGCACTTCTTCAGCAGATCCCTTCACATTTGGCACCAAGCAGCATATCAATCTCTCCAAAAAATCCCTCAAAACAAGGGAACCCAACTTGCACAAAATTGATATAAAGAGTGAAAACATAATCACAACTTGGATTGATTACAAGAGTGGTCGAACAGTTCTCGACATTGTTGGTGAAGATGTTGTAGTGATCTTCGACAAGGCCACTGGAAAGTCTAAGGGCTACGACTTCGTCGCCTTCCGCCACGTCGACAGTGTCGTCCTCGCCCTCCGCGAGCCCAACAAGCGCATTGACAGGTGTGTCACCGTCACACAACTCACCATCGCTGGAAATTCCAACTCTAACGCCAACACAACCTACATAGCGCTTCGTAAGATATACGTTGTAAACGTCCCTCTGGATCTCCCAGTATACAAGCTCCTCGCCCATTTCTCTCTCTACGGTGAGATCGAAGAAGGTCCATTGGGCTTTGACAAGCAAACAGGAAAGTCTAAGGGGTTCGCGCTCTTCATGTATAAGACCTCAAAGAGGGCGCAAGCAGCACTCTTGGATTCCGTGAGGACCGTGGAAGGGAGACAGCTGAATTGCAAGTTCGCAATAACTAACAATAAGCATAGTGAATTCCCTTGCTACAAGGATGTGAATGCCAGAAACTCTTTGACACAATGCCTTAAAAGGATGTTCAGAAACTTTTTGTTGTAA 915 0.4514 MRASNSVLQRQYRSRLTRKSLESSMTSLASEGSLSFNRFYPSESLIISRSLTFFSKFFSSVGCCTVLSLECCTSSADPFTFGTKQHINLSKKSLKTREPNLHKIDIKSENIITTWIDYKSGRTVLDIVGEDVVVIFDKATGKSKGYDFVAFRHVDSVVLALREPNKRIDRCVTVTQLTIAGNSNSNANTTYIALRKIYVVNVPLDLPVYKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFMYKTSKRAQAALLDSVRTVEGRQLNCKFAITNNKHSEFPCYKDVNARNSLTQCLKRMFRNFLL. 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00164 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 264 IPR000504 GO:0003723
Seca6g00164 304 Gene3D - 87 181 IPR012677 -
Seca6g00164 304 SUPERFAMILY RNA-binding domain, RBD 177 276 IPR035979 GO:0003676
Seca6g00164 304 Gene3D - 182 279 IPR012677 -
Seca6g00164 304 PANTHER GEO13361P1-RELATED 188 275 - -
Seca6g00164 304 SUPERFAMILY RNA-binding domain, RBD 130 166 IPR035979 GO:0003676
Seca6g00164 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 272 IPR000504 GO:0003723
Seca6g00164 304 SMART rrm1_1 196 268 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00164 Seca-Chr6 4160274 4164008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00164 192 270 C2H2 Transcription Factor Family AT2G19380 37.975 6.53e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00164 K12741 - gmx:100776220 218.394