Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00160 ATGATGAACCATAACCATACTACATGTTGTACTTTCCTTGCAATTCCAGTGACTTTGGTGGTTTTGCTAGCTCTATGTCAAGCCACTTCAGGGCTGACACAAGCTGAGGCTCTGCTGAGGTGGAAACAAAGTCTCCCAAACCAACCAATTTTGGATTCATGGGTGATTAACTCCACTTCATCTCAAAGTCCATGTTCATGGAGAGGTATCACTTGTGATTCTCAAGGCATAGTGACTATAATCAACTTGGCATACACTGGACTTGAAGGTACCCTCAAAGACTTGAACTTTTCTGTTTTCCCAAACCTCCTTCGTCTTGATCTCAAAACAAACAATCTCACTGGCACCATACCACAAAACATTGGTGTCCTTTCCAAACTCCAATTCCTTGATCTTTCCACAAATTACCTCAATGGCACTTTACCTCTTTCTATTGCCAATCTGACTCAAGTTTATGAGCTTGATGTTTCAAGAAATGACATAACAGGGATATTAGACCCTCGTTTATTCCCTGATGGAACTGATCAGCCAAAAACTGGTCTAATTGGCATCAGGAATCTCCTCTTTCAGGATACCCTTTTGGGTGGCATGCTTCCTAATGAAATAGGGAACATCAAAAACTTGACTCTGCTAGCTTTAGATGCAAACAACTTCTATGGGCCTATACCTCCATCACTAGGAAACTGTACACATTTAAGCATTCTCAGATTGAATGAGAATCAATTCTCAGGCACAATACCCCCAAGTATTGGTAAGTTAACCAATCTAACTGATGTGAGGTTGTTCACCAACAACTTAAATGGTACTGTGCCAAAAGAATTTGGAAACCTGTCTTCTTTGATTGTGCTGCATCTTGCTGAGAACAACTTTATTGGTGAGTTACCACCACAAGTATGCAAGAGTGGCAAGCTTGTCAATTTTAGTGCAGCCTTTAATAGTTTCACTGGTCCAATTCCAGTGAGTCTTAGAAACTGCCCATCTTTATATAGAGTTAGGATGGAATATAATCACCTCACAGGGTATGTAGATACAGATTTTGGAGTATATCCTAACCTTACTTACATGGACTTCAGCTATAATAGGGTGCAAGGTGAGCTCACTTCAAATTGGGGTGCCTGCAAAAACTTGCAATCACTCAAAATGGCTGGGAATTCAGTGAGTGGTAACATTCCAGGTGAGATTTTTCAGTTGGATCAACTAGTAGAGCTTGATCTATCATCCAACCAAATATCAGGAGAGATTCCTCCACAGATTGGAAACTCCTCAAACTTGTATGATTTATATTTGGGTGGCAACAAACTTTCTGGTGTGATACCAGTTGAAATTGGAAAACTTTCTAATTTAAGGTCTTTAGACTTGTCAATGAACCAGCTTTTGGGGCCAATCCCAGATCAGATAGGGGACTGCTCCAACTTGCAGAATTTAAACTTGAGCAACAATCACTTGAATGGCACAATCCCCTTCCAAATTGGAAATCTTGCAGACTTACAAGATTTTTTGGACTTGAGTTTCAATTCACTTTCAGGGGAAATTCCTGGTAATCTTGGTAAGCTTTCAAATTTGATAAGCTTGAATATCTCTCACAACAATCTGTCAGGTTCTATCCCTAATTCCTTCACTGGAATGTTAAGCTTGTCAGCCATTAACCTCTCCTACAATCATTTGGAGGGTCCTGTTCCTGAAGGTGGCATATTCAAATTCAACTCTTCTCATCCATTGGATTTGAGCAACAACAAAGATTTATGTGGGAATATCCAAGGCTTACCACCTTGTAGTGTTTCCCTCACTGAACCAGGTGGTGGAAGTAACAAACACAAGGTCTGGATTCCCATTGTTGCTTCTTTGGGAGGTGCTTCTTTACTTTCATTGGTGTTGGTTGGGATCTTTTTCTTCTGCTATAAGAGTAAGTCAAGAGTCTTGAGACAAAAATCTTCACTCAAGAAACCAAATCCATTTTCAATTTGGTACTTTAATGGAAGAGTTGTGTATGGAGACATAATTGAAGCTACCAAGAATTTTGACAACCAATATTGCATTGGGGAAGGAGCATTGGGGAAAGTTTACAAAGCAGAGATGAGAGGGGGTCAAGTATATGCTGTGAAAAAGTTGAAATGTGATTCAGACAACATAGACACTGAGAGTATAAAAGCCTTTGAGAGTGAGGTAGAAGCCATGAGAGAAACACGCCACAGAAACATTGTGAAGCTTTATGGATTTTGCTGTGAAGGGATGCACACATTTCTGATTTATAAGTATATGGATAGAGGGAGCTTAGCTGATATGTTGATAGATGAGAAGAAAGCATTAGAATTAGATTGGCAGAAGAGGGTTGGTATTATCAAAGGTGTAGCAAGTGCTCTATCCTATATGCATTATGACTGTGCTCCACCTTTAATTCATAGAGACATATCAAGCAAGAATGTTTTATTATCCTCCAATCTTGAAGCACATGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAGCCTGATTCGCCTATTTGGACATCATTTGCCGGCACATATGGTTATGCTGCTCCAGAACTTGCTTACACAATGGCAGTGACTGAGAAATGTGATGTGTTCAGCTTTGGTGTTTTGGCATTTGAGATTCTTACCGGAAAGCACCCTGGTGATCTTGTTTCCTACATACAAAATACAAGTGATCAAAAGATAAACTTCAAAGAGATTTTAGACCCGCGACTCTCAACTCCTACAAAGAATATTTTGAAGGATTTGGCATTGATTGCGAACTTAGCTCTTTCTTGTATAAAAACAAACCCTCAATCTCGACCAACCATGCGAAGCATAGCTCAGCTGCTTGAAATGGAGACGGTAGAAAACTTGTGA 2847 0.3987 MMNHNHTTCCTFLAIPVTLVVLLALCQATSGLTQAEALLRWKQSLPNQPILDSWVINSTSSQSPCSWRGITCDSQGIVTIINLAYTGLEGTLKDLNFSVFPNLLRLDLKTNNLTGTIPQNIGVLSKLQFLDLSTNYLNGTLPLSIANLTQVYELDVSRNDITGILDPRLFPDGTDQPKTGLIGIRNLLFQDTLLGGMLPNEIGNIKNLTLLALDANNFYGPIPPSLGNCTHLSILRLNENQFSGTIPPSIGKLTNLTDVRLFTNNLNGTVPKEFGNLSSLIVLHLAENNFIGELPPQVCKSGKLVNFSAAFNSFTGPIPVSLRNCPSLYRVRMEYNHLTGYVDTDFGVYPNLTYMDFSYNRVQGELTSNWGACKNLQSLKMAGNSVSGNIPGEIFQLDQLVELDLSSNQISGEIPPQIGNSSNLYDLYLGGNKLSGVIPVEIGKLSNLRSLDLSMNQLLGPIPDQIGDCSNLQNLNLSNNHLNGTIPFQIGNLADLQDFLDLSFNSLSGEIPGNLGKLSNLISLNISHNNLSGSIPNSFTGMLSLSAINLSYNHLEGPVPEGGIFKFNSSHPLDLSNNKDLCGNIQGLPPCSVSLTEPGGGSNKHKVWIPIVASLGGASLLSLVLVGIFFFCYKSKSRVLRQKSSLKKPNPFSIWYFNGRVVYGDIIEATKNFDNQYCIGEGALGKVYKAEMRGGQVYAVKKLKCDSDNIDTESIKAFESEVEAMRETRHRNIVKLYGFCCEGMHTFLIYKYMDRGSLADMLIDEKKALELDWQKRVGIIKGVASALSYMHYDCAPPLIHRDISSKNVLLSSNLEAHVSDFGTARFLKPDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILTGKHPGDLVSYIQNTSDQKINFKEILDPRLSTPTKNILKDLALIANLALSCIKTNPQSRPTMRSIAQLLEMETVENL. 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00160 948 SMART LRR_typ_2 397 421 IPR003591 -
Seca6g00160 948 SMART LRR_typ_2 518 541 IPR003591 -
Seca6g00160 948 SMART LRR_typ_2 148 172 IPR003591 -
Seca6g00160 948 SMART LRR_typ_2 277 301 IPR003591 -
Seca6g00160 948 SMART LRR_typ_2 100 124 IPR003591 -
Seca6g00160 948 SMART LRR_typ_2 445 469 IPR003591 -
Seca6g00160 948 SUPERFAMILY Protein kinase-like (PK-like) 647 942 IPR011009 -
Seca6g00160 948 Gene3D Ribonuclease Inhibitor 32 172 IPR032675 -
Seca6g00160 948 Gene3D Phosphorylase Kinase; domain 1 633 752 - -
Seca6g00160 948 FunFam MDIS1-interacting receptor like kinase 2 753 946 - -
Seca6g00160 948 SUPERFAMILY L domain-like 61 390 - -
Seca6g00160 948 ProSitePatterns Tyrosine protein kinases specific active-site signature. 798 810 IPR008266 GO:0004672|GO:0006468
Seca6g00160 948 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 179 270 - -
Seca6g00160 948 FunFam Leucine-rich repeat receptor protein kinase MSP1 635 752 - -
Seca6g00160 948 Gene3D Transferase(Phosphotransferase) domain 1 753 947 - -
Seca6g00160 948 SUPERFAMILY RNI-like 312 566 - -
Seca6g00160 948 ProSiteProfiles Protein kinase domain profile. 673 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00160 948 Gene3D Ribonuclease Inhibitor 179 268 IPR032675 -
Seca6g00160 948 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Seca6g00160 948 PRINTS Leucine-rich repeat signature 445 458 - -
Seca6g00160 948 PRINTS Leucine-rich repeat signature 400 413 - -
Seca6g00160 948 SMART serkin_6 673 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00160 948 FunFam Leucine-rich repeat receptor-like protein kinase TDR 275 593 - -
Seca6g00160 948 Pfam Protein kinase domain 678 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00160 948 Gene3D Ribonuclease Inhibitor 269 594 IPR032675 -
Seca6g00160 948 PANTHER LEUCINE RICH REPEAT KINASE 2 192 944 - -
Seca6g00160 948 FunFam Nuclear pore complex protein NUP107 32 170 - -
Seca6g00160 948 Pfam Leucine rich repeat 500 555 IPR001611 GO:0005515
Seca6g00160 948 Pfam Leucine rich repeat 422 482 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00160 Seca-Chr6 4014275 4018106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00160 20 846 Receptor kinase-like Gene Family AT4G08850 39.653 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca6g00160 Pkinase 7.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00160 - - aprc:113866080 1543.1