Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00147 ATGTTTTCTCGAGCTAAGGTGCAGACTGTTCTTCCTCCAAGCGGGAGGCGTGGCCGTCTAAGTAGTTCTGTCAAAGAGGATATTGAGAAATTTCATAATGAAGCATCTGATGAACAAAAGGCAGCTAATGAATGTAAAAGGAATAAAAGAGAGGCAGAGATCAAGCTGGGGGAGCTTGACAGGAATATGAATTCTATAAAGAGGCGTTGTATAAATGCTGGTAGAAGTCTTACTTCTAAGAAGATAGCTTTGGAAGAGGCCATGCATCAGCATGCTGCTGAAAGTAGCTCAACACCTTTGCCCTCAGTTGATGAGATTATTGAAGCAATTTCAGAAGTCAAGAAAAAAATAAAAGAAGAGCATGTCTTGTTGGAAGGCCTTGAGCAGAGGAGGCTTGAAGCAGTAGGAAAAGAAGATGATCTTAAAGTAAAATTTGACAAACTGTGTGAATCAACGAAAGGGGAAATTTCTGCCCTTGAGAAAGCCGAGAGTGAACTTATGGAGGTTGAAAGAGAAATGGATTCGGCAAATGAGGAGAAGAATCATTATGACGGTGTCATGAAAAACAAGGTTCTACGTGATATTAAGGAGGCAGAGGAACACTATCTGGAGCTTACAAAGACGCGTGAGGAGAATTTTGAAAAGGCTTCCATAATTTGCTGTCAGAATGAACTTGATTCGTACTCTGAATCAATTGATGATCTTAGGATGCTGTATGCGAAAAAAGAACGGAAGATCATGAAAAGACAGCAAGTTTACAAAGCCCTTCGACAGAAATTGGATGCTTGCCAGAGAGCCTTACTGTTACGAAGGAGCAAGTTTCAGAGAAATGCAACTTATCTGAAGCACCAACTTTCTTGGAAATTTAATGGCCATTTGAGAAAGAAGGGGATCAGTGGACTTATCAAAGTTAATTATGAAGAGAAAACCTTATCGATTGAGGTACAGATGCCCCAAGACGCATCAAACAGAGCTGTCCAAGACACCAGGGGTCTTTCAGGTGGGGAGCGTTCTTTTTCAACATTGTGCTTTGCATTAGCCCTTCATGAAATGACAGAGGCCCCTTTTAGAGCAATGGATGAATTTGATGATGCAGTAAGCCGAAAAATCAGCTTGGACACTCTAGTTGATTTTGCTGAGGCACAAGGATCCCAATGGATATTCATCACCCCGCATGATACTAGGTATTGTTTTAAGAACAACATGGTTATTTGTTATGAAGACTCTAAGAATAATGAGATTCCTGTTTAG 1251 0.4069 MFSRAKVQTVLPPSGRRGRLSSSVKEDIEKFHNEASDEQKAANECKRNKREAEIKLGELDRNMNSIKRRCINAGRSLTSKKIALEEAMHQHAAESSSTPLPSVDEIIEAISEVKKKIKEEHVLLEGLEQRRLEAVGKEDDLKVKFDKLCESTKGEISALEKAESELMEVEREMDSANEEKNHYDGVMKNKVLRDIKEAEEHYLELTKTREENFEKASIICCQNELDSYSESIDDLRMLYAKKERKIMKRQQVYKALRQKLDACQRALLLRRSKFQRNATYLKHQLSWKFNGHLRKKGISGLIKVNYEEKTLSIEVQMPQDASNRAVQDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDDAVSRKISLDTLVDFAEAQGSQWIFITPHDTRYCFKNNMVICYEDSKNNEIPV. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00147 416 Coils Coil 152 186 - -
Seca6g00147 416 Gene3D - 103 414 IPR027417 -
Seca6g00147 416 Coils Coil 188 208 - -
Seca6g00147 416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 407 IPR027417 -
Seca6g00147 416 Coils Coil 110 130 - -
Seca6g00147 416 Coils Coil 28 69 - -
Seca6g00147 416 MobiDBLite consensus disorder prediction 1 23 - -
Seca6g00147 416 Coils Coil 225 245 - -
Seca6g00147 416 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00147 Seca-Chr6 3684602 3695492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00147 1 393 Structural Maintenance of Chromosomes family AT5G61460 51.174 2.17e-121 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00147 K22804 - gmx:100816916 574.318