Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00146 ATGAAGCGACCAAGAGACACGGGGGATTCCAGTTCTAGGGTTTCCCCTTCTCTTCAGGCAGGCATAATCAAGAGACTTCGATTGGAGAACTTCATGTGCCATTCCAACCACGAGACCGAGTTCGGAAGCCACGTCAATTTCATCACTGGCCAAAATGGAAGTGGCAAGAGTGCAATCCTAACTGCTTTGTGTGTTGCATTTGGTTGTCGAGCAAAAGGAACTCAAAGGGCATCCACTTTGAAGGATTTCATTAAAACTGGTGCCAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTTAAGCCTGAAATATATGGTGGGGTTATCATTGTAGAACGTAGGATATCTGAATCTGCAACCTCTACTACCTTAAAAGATCACCAAGGAAAGAAAGTTTGTAGTCGGAAAGCAGATCTTCAAGAAATTATTGAACATTTTAATATTGATGTTGAGAACCCATGTGTAATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCGGGGAACAACAAAGATAAATTTAAGTTTTTTTACAAGGCCACGCTACTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTCCAATGAATTAACTAGTGCACATGGAATAGTTGAAGAATTAGAAACTGCAATAAGGCCCATAGAGAAAGAGCTTAATGAGCTGCAGGTGAAAATTAAAACTATGGAGCATGTTGAACAAATATCCATAAAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTCGACAAGAAACTCGAGGAACAAAATGCAAGGATTGAAATGTTGAAGAGCCGGATACCTATCTGTCAAGCTAAGATTGATCAACAACGGGATCAGATTGAAAAATTGAGGGAAAGCTGCTCTAAGAAGAAAGCTGAAATTGCAACTATGTTGGAAACGACATCACAAGTTAAGCAAATGAAGGAGAATTTAAGCCAGTTTTTGTCCTTGGCAAAAAAAGAAGCATTTGAACTTGGGCGAGATTGCAAATCCAAAACTAGCCACATACAGAAGATGGTACAGCAACGCAAAATGCTTGAACAACAAATGCATGATATTCATGAGCAGCATGCAAAAAATACTCAGGTTCTACAAGTCCCTAGTTATGGATAA 1146 0.3909 MKRPRDTGDSSSRVSPSLQAGIIKRLRLENFMCHSNHETEFGSHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIHVEIQNEGEDAFKPEIYGGVIIVERRISESATSTTLKDHQGKKVCSRKADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISNELTSAHGIVEELETAIRPIEKELNELQVKIKTMEHVEQISIKVQQLKKKLAWSWVYDVDKKLEEQNARIEMLKSRIPICQAKIDQQRDQIEKLRESCSKKKAEIATMLETTSQVKQMKENLSQFLSLAKKEAFELGRDCKSKTSHIQKMVQQRKMLEQQMHDIHEQHAKNTQVLQVPSYG. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00146 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 326 IPR027417 -
Seca6g00146 381 Coils Coil 347 367 - -
Seca6g00146 381 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 18 373 - -
Seca6g00146 381 Coils Coil 210 230 - -
Seca6g00146 381 Pfam AAA domain 25 261 IPR038729 GO:0006302|GO:0016887
Seca6g00146 381 Coils Coil 284 311 - -
Seca6g00146 381 Gene3D - 23 276 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00146 Seca-Chr6 3657932 3663330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00146 20 376 Structural Maintenance of Chromosomes family AT5G07660 61.905 5.45e-156 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00146 K22804 - gmx:100816916 588.186