Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00145 ATGGAGAAGAACAACAGTAGAGTCTGCAGGATTTGCGATAAGCGCTTCTCCAATGGAAAAGCCATGGGAGGCCACATGAGATCTCACTTTGCCAAATTGCCAATTCCTCCAAAGCCTGAAACCAAGAATCAAGCACTGGACAACTCAGCCGAGTTAACCCAGTACCCAATTCAATCGGCTTCCTCACTGACTGACCATTCCAAAAAGAAACCAGCACAGAATTTCCGATCTTTGAAGCGCAACTTCTTTGCCTTCTTGGCAAACTCAAACAGAGGAAATGAATCCGGGTCTTACCCTAAAAACCCAACCCGCAAAAGATCCAAATGCCACCGCAAAATTTTTGCAGAAGCTGAACCAAAACAAATGAATTCAATACCTGAAACTTTTCATGCAGAAGAAGCTGCTTGGTCTCTGTTAATGCTTTCCAAGGATAAATGGCCAGAAAGCAAAGAGATCAAGACACACAAAATGAAGGAAGCCATCGAAAGGGAGGCAAAAGAAGATGGTGAAAATGGTGGCGATGACTTGCTTGTTCAAATTCACGCTCGAGCAAGGTTCAAGTGTGAGTGGTGTGGGAAAATGTTTCAATCTTATCAAGCTCTTGGTGGACACAAAGCAAACCATAAGAAGAAGAATCCATGCCAAGAAGGTGGTGACTTTGAAGATGACCAAAGTGGCAACAATAGCAACGTTGCAGATCAAAAAGCTTTTGAGTGCCCATATTGCTACAGAGTGTTCAAGTCTGCTCAAGCACTCGGTGGACACAAGAAGGTACATTTCTCCAATACTAAGACTGCTACTGCTCATACCAGTACAAATGAATTTGGAGGTATGTTGGTAGATCTTAATTTTCCAGCTTCTGGAGAAGATGAGGAGGTTACACATGGAATTTAA 894 0.4295 MEKNNSRVCRICDKRFSNGKAMGGHMRSHFAKLPIPPKPETKNQALDNSAELTQYPIQSASSLTDHSKKKPAQNFRSLKRNFFAFLANSNRGNESGSYPKNPTRKRSKCHRKIFAEAEPKQMNSIPETFHAEEAAWSLLMLSKDKWPESKEIKTHKMKEAIEREAKEDGENGGDDLLVQIHARARFKCEWCGKMFQSYQALGGHKANHKKKNPCQEGGDFEDDQSGNNSNVADQKAFECPYCYRVFKSAQALGGHKKVHFSNTKTATAHTSTNEFGGMLVDLNFPASGEDEEVTHGI. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00145 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 213 IPR013087 -
Seca6g00145 297 Pfam C2H2-type zinc finger 236 259 - -
Seca6g00145 297 Pfam C2H2-type zinc finger 8 29 - -
Seca6g00145 297 Pfam C2H2-type zinc finger 185 211 - -
Seca6g00145 297 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 291 IPR044303 GO:0006355
Seca6g00145 297 MobiDBLite consensus disorder prediction 205 229 - -
Seca6g00145 297 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Seca6g00145 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Seca6g00145 297 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Seca6g00145 297 ProSitePatterns Zinc finger C2H2 type domain signature. 188 208 IPR013087 -
Seca6g00145 297 Gene3D Classic Zinc Finger 183 259 - -
Seca6g00145 297 SMART c2h2final6 186 208 IPR013087 -
Seca6g00145 297 SMART c2h2final6 7 29 IPR013087 -
Seca6g00145 297 SMART c2h2final6 237 259 IPR013087 -
Seca6g00145 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Seca6g00145 297 SUPERFAMILY beta-beta-alpha zinc fingers 186 259 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00145 Seca-Chr6 3647856 3648749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00145 9 294 C2H2 Transcription Factor Family AT3G60580 34.528 5.58e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca6g00145 zf-C2H2_6 1.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00145 - - cam:101511854 291.582