Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00140 ATGAAACCTTTTCTTTTCTTTCTCACATTCTCCTTCTTTTGCCAAACACAGCTAGTTTTCTCCGCTACAACTCTGCCCCTCCAACTCATCACCCTGCTTTCAATAAAATCCTCCCTCATAGACCCTCTCAAGAACCTCCATGACTGGGACCCTTCCCCCACCTTCTCCAACTCCAATTACCAACAACACCCAATATGGTGTTCCTGGAGAGGCATCACATGCCACCCAAAAACAGCACAAATCATCTCCCTTGACCTCTCTCGCCTCAACCTTTCAGGCACAATCTCACGCGAAATCCGCTACCTATCCACCTTAAACCACTTGAACATCAGTGGAAATGACTTCAGTGGAGCTTTCCAAGCAGCAATTTTCCAACTCACTGAGCTGAGGACTCTAGACATCAGCCACAACTCCTTCAACTCAACTTTCCCACCAGGAATCTCAAAGCTCAAGTTCTTAAGGGTCTTCAATGCTTACAGCAACAGTTTCACTGGCCCTCTACCTCAAGAGCTAATCAGGCTTCGGTTTCTTGAAGAGCTCAACCTCGGAGGAAGCTACTTCCGGGACAGGATTCCACAAGGTTATGGCACTTTCCCAAGACTCAAGTTCCTAGATTTAGCAGGTAACGCCTTGGAAGGTCCACTACCACCTCAACTAGGCTCATTACCCTTGCTGGAACACTTGGAAATAGGATACAACCCATTCTCAGGACCTTTACCAGTGGAATTGGCAATGCTGTCTAATCTCAAATACTTGGACATCTCATCTACTAACATCTCAGGAAGCTTGATCTCAGAACTTGGGAACATGACCATGCTGGAGACATTGTTGCTCTTCAAGAATCGCCTAACAGGTCAAATCCCATCAAGCATAGGTAACTTGAAATCCCTGAAAGCTCTTGATTTATCAGACAACGAACTCACAGGGCAAATTCCAACACAAGTTTCCATGCTAAAGGAACTAACCAGGTTGAGCCTCATGGAAAACAAGCTCACAGGGGAAATACCACTAGGAATTGGAGAACTGCCAAACTTGGACACTCTCCTTCTCTTCAACAACTCACTAACAGGAACCCTCCCACCCCAACTTGGCTCCAATGGGTTACTACAAATTCTAGATGTTTCCACAAACTCACTCCAAGGTCCAATCCCTGAAAATGTGTGCAAAGGCAACAAGCTCTTTAAGTTCATACTCTTCAACAACAAATTAAGCAATGTTCTTCCAAAATCCCTTACCAACTGCACCTCACTCGCCAGGGTTCGCATCCAAAACAACCACCTCAACGGTTCCATCCCTCAAGAACTAACACTCCTCCCCAACCTAACGTTCCTTGACATGAGCAACAACAACTTCCAAGGTCAAATTCCTCCAAACTTGGGGAACTTACAGTACTTCAACATCTCAGGAAACTCCTTTGGAAACCCCTTACCAAGTAGCATATGGAATGCGAGTAACCTTCAGATTTTCTCAGCTGCATCGTCGAAAATCACTGGTCAGATTCCAGATTTCATTGGTTGCCAAACCATATACAGGATTGAATTGCAAGGAAACTCCATCAATGGTAGCATTCCATGGGACATTGGTCACTGTCAGAAGCTGATTCTGTTGAATCTCAGCAGAAACTCCCTCACCGGAATCATCCCCTGGGAAATCTCAACTCTTCCTTCCATCACCGACGTTGACCTTTCTCATAATTCCCTCACCGGAACCATACCTTCGAACTTCAACAACTGCTCTACTCTCGAGAACTTCAACGTTAGCTTCAACTCCCTCACCGGACCTATTCCTTCCTCCGGCGTCTTCCCCAGCCTCCACCCTTCCTCCTACTCCGGCAACCAAGGCCTCTGCGGGAGAATCCTCGCCAAGCCCTGCGCCGCCGACGCACTCGCCGCCGGCGAGAACGAGCTCGAGGTCCGCCGGCAGCAACCGAAGCGAACCGCCGGTGCAATCGTTTGGATCGTCGCGGCAGCGTTCGGGATCGGGCTGTTCGTTCTCGTCGCCGGGACGCGGTGCTTCCATGCGAACTATAACCGTCGATTCAGCGGCGAGGGCGGGAACGAGATCGGGCCGTGGAAGTTAACGGCGTTTCAGCGGTTGAATTTCACGGCGGAGGATGTGTTAGAGTGTTTGTCTATGTCAGATAAGATACTGGGGATGGGGTCCACAGGAACGGTTTATAGGGCGGAAATGCCAGGTGGCGAGATCATAGCGATTAAGAAGCTGTGGGGGAAGCACAAGGAGAATATCAGACGGAGGAGAGGGGTTTTGGCTGAGGTGGATGTGTTGGGGAACGTGAGGCACAGGAACATAGTGAGGTTGTTAGGGTGTTGCAGCAACAGGGAGTGCACAATGCTGCTTTATGAGTACATGCCAAATGGGAACTTAGATGATTTGTTGCATGGGAAGAATAAAGGAGACAATATGGTTGCTGATTGGTTCACCAGGTACAAGATAGCCCTGGGTGTGGCTCAGGGGATTTGCTATCTTCACCATGACTGTGATCCCGTCATCGTGCATCGGGATCTCAAACCTAGTAACATATTATTGGACGGTGAGATGGAGGCCAGAGTGGCAGATTTTGGGGTTGCCAAGTTAATTCAAACGGATGAGTCCATGTCTGTTATTGCTGGATCCTATGGCTACATTGCTCCAGAATATGCTTACACACTGCAAGTGGATGAGAAGAGTGATATCTACAGCTATGGAGTGGTGTTGATGGAGATTTTAAGTGGAAGGCGTTCGGTGGATGCAGAATTTGGTGATGGGAATAGCATTGTGGATTGGGTTAGGTCTAAGATCAAGACAAAAGATGGGATGGATGATGTATTGGATAAGAATGCAGGGGCAGGGTGTGGCTCAGTGAGGGAGGAAATGATACAAATGCTTAGAATTGCATTGCTTTGCACAAGCAGGAACCCAGCAGATAGGCCTTCCATGAGAGATGTTGTGTTGATGCTGCAAGAGGCTAAGCCAAAAAGGAAATTGCTTGATAGTGTTATTGTAGGTCGATGTGCTAGTGACAATGTGGTTGGTGGTGCTGATATTCCTTTGCCACAAAAGCCAACTGCGGAAAGTTAA 3078 0.4792 MKPFLFFLTFSFFCQTQLVFSATTLPLQLITLLSIKSSLIDPLKNLHDWDPSPTFSNSNYQQHPIWCSWRGITCHPKTAQIISLDLSRLNLSGTISREIRYLSTLNHLNISGNDFSGAFQAAIFQLTELRTLDISHNSFNSTFPPGISKLKFLRVFNAYSNSFTGPLPQELIRLRFLEELNLGGSYFRDRIPQGYGTFPRLKFLDLAGNALEGPLPPQLGSLPLLEHLEIGYNPFSGPLPVELAMLSNLKYLDISSTNISGSLISELGNMTMLETLLLFKNRLTGQIPSSIGNLKSLKALDLSDNELTGQIPTQVSMLKELTRLSLMENKLTGEIPLGIGELPNLDTLLLFNNSLTGTLPPQLGSNGLLQILDVSTNSLQGPIPENVCKGNKLFKFILFNNKLSNVLPKSLTNCTSLARVRIQNNHLNGSIPQELTLLPNLTFLDMSNNNFQGQIPPNLGNLQYFNISGNSFGNPLPSSIWNASNLQIFSAASSKITGQIPDFIGCQTIYRIELQGNSINGSIPWDIGHCQKLILLNLSRNSLTGIIPWEISTLPSITDVDLSHNSLTGTIPSNFNNCSTLENFNVSFNSLTGPIPSSGVFPSLHPSSYSGNQGLCGRILAKPCAADALAAGENELEVRRQQPKRTAGAIVWIVAAAFGIGLFVLVAGTRCFHANYNRRFSGEGGNEIGPWKLTAFQRLNFTAEDVLECLSMSDKILGMGSTGTVYRAEMPGGEIIAIKKLWGKHKENIRRRRGVLAEVDVLGNVRHRNIVRLLGCCSNRECTMLLYEYMPNGNLDDLLHGKNKGDNMVADWFTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGRRSVDAEFGDGNSIVDWVRSKIKTKDGMDDVLDKNAGAGCGSVREEMIQMLRIALLCTSRNPADRPSMRDVVLMLQEAKPKRKLLDSVIVGRCASDNVVGGADIPLPQKPTAES. 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00140 1025 Pfam Protein kinase domain 714 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00140 1025 FunFam Leucine-rich repeat receptor-like protein kinase TDR 316 626 - -
Seca6g00140 1025 SUPERFAMILY Protein kinase-like (PK-like) 714 986 IPR011009 -
Seca6g00140 1025 Gene3D Ribonuclease Inhibitor 95 340 IPR032675 -
Seca6g00140 1025 Gene3D Ribonuclease Inhibitor 28 94 IPR032675 -
Seca6g00140 1025 FunFam leucine-rich repeat receptor-like protein kinase TDR 790 998 - -
Seca6g00140 1025 ProSitePatterns Protein kinases ATP-binding region signature. 717 740 IPR017441 GO:0005524
Seca6g00140 1025 Gene3D Phosphorylase Kinase; domain 1 692 789 - -
Seca6g00140 1025 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 681 789 - -
Seca6g00140 1025 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 74 265 - -
Seca6g00140 1025 SUPERFAMILY L domain-like 369 617 - -
Seca6g00140 1025 ProSiteProfiles Protein kinase domain profile. 711 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00140 1025 Pfam Leucine rich repeat 273 331 IPR001611 GO:0005515
Seca6g00140 1025 SMART LRR_typ_2 554 577 IPR003591 -
Seca6g00140 1025 SMART LRR_typ_2 198 222 IPR003591 -
Seca6g00140 1025 SMART LRR_typ_2 342 366 IPR003591 -
Seca6g00140 1025 SMART LRR_typ_2 126 150 IPR003591 -
Seca6g00140 1025 SMART LRR_typ_2 438 462 IPR003591 -
Seca6g00140 1025 SMART LRR_typ_2 294 318 IPR003591 -
Seca6g00140 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
Seca6g00140 1025 SMART serkin_6 711 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00140 1025 Pfam Leucine Rich Repeat 532 553 IPR001611 GO:0005515
Seca6g00140 1025 Gene3D Transferase(Phosphotransferase) domain 1 790 1001 - -
Seca6g00140 1025 SUPERFAMILY RNI-like 83 427 - -
Seca6g00140 1025 Gene3D Ribonuclease Inhibitor 342 627 IPR032675 -
Seca6g00140 1025 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 243 988 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00140 Seca-Chr6 3598028 3601972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00140 3 994 Receptor kinase-like Gene Family AT1G08590 42.188 0.0 747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca6g00140 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00140 - - gmx:100813189 1738.78