LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g00139	ATGTTTGGGAAGAAAGAGAAACAGAAAGACAGCGATAGCGAGGAAGACGACATATTCTACTACCGTTATTGCGCTGCATCATCCACCTCCTCAAAACCCGACGCCGCAAACGCAACCCAGACCCAACCCATACCCAAGAACAACAAGGGAGGATCAGGATCGTTGGCTCCGTTCAAATCAACGGTCCACGTTTCGAACCTCGACTATTCCCTAACTAACTCCGACCTCCACATTATTTTCTCAACCTTTGGCCACATCGCTCGCGTAACCGTCCTCAAAGACCGCCACACGCGCCTCAGCCGCGGCGTTGCCTTCATCCAGTTCGTTTCCCGCCACGACGCTCGTCGTGCCGCCTCTGAAATGCACCATAAGATCCTCAACGGCCGCACTCTCACCGCCTCCATCGCTGCCGATAACGGTCGCGCCCCCGAGTTCATCCGCAAGCACGTGTACACTGACACCGTCCGCTGCTTCGAGTGTGGGGCTTCCGGCCACCTCTCTTATGAATGCCCGAGGAACCAATTGGGTCCTCGCCCCCGTCCCCAGCCCAAGTGGACCCGCCGAGGGTTCGAACGGCCCAAGGACGAGGAGGAGGATGAGGACGACGATGGAGGCGGTGAGAAGGCGGCACGACGAGCGTTGTGGCGGGAAACGAACTGGATGAAGGCAACGTCGCGGCTGAGGCGTGTGTGGCGGTCTTTGAGGACGGTTACGCGAGCGATGTGGCCAAAGGTTGAGAAAAGAATGTGGAGGTCGGAGTTAGTTAGGGAATAG	774	0.5762	MFGKKEKQKDSDSEEDDIFYYRYCAASSTSSKPDAANATQTQPIPKNNKGGSGSLAPFKSTVHVSNLDYSLTNSDLHIIFSTFGHIARVTVLKDRHTRLSRGVAFIQFVSRHDARRAASEMHHKILNGRTLTASIAADNGRAPEFIRKHVYTDTVRCFECGASGHLSYECPRNQLGPRPRPQPKWTRRGFERPKDEEEDEDDDGGGEKAARRALWRETNWMKATSRLRRVWRSLRTVTRAMWPKVEKRMWRSELVRE.	258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g00139	257	SUPERFAMILY	Retrovirus zinc finger-like domains	141	173	IPR036875	GO:0003676\|GO:0008270
	Seca6g00139	257	MobiDBLite	consensus disorder prediction	172	209	-	-
	Seca6g00139	257	SMART	c2hcfinal6	156	172	IPR001878	GO:0003676\|GO:0008270
	Seca6g00139	257	PANTHER	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	9	210	IPR044598	GO:0000398\|GO:0005689
	Seca6g00139	257	ProSiteProfiles	Zinc finger CCHC-type profile.	156	172	IPR001878	GO:0003676\|GO:0008270
	Seca6g00139	257	MobiDBLite	consensus disorder prediction	27	53	-	-
	Seca6g00139	257	Gene3D	-	3	144	IPR012677	-
	Seca6g00139	257	Gene3D	-	147	183	-	-
	Seca6g00139	257	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	60	138	IPR000504	GO:0003723
	Seca6g00139	257	FunFam	U11/U12 small nuclear ribonucleoprotein 31 kDa protein	3	144	-	-
	Seca6g00139	257	SMART	rrm1_1	61	134	IPR000504	GO:0003723
	Seca6g00139	257	SUPERFAMILY	RNA-binding domain, RBD	37	142	IPR035979	GO:0003676
	Seca6g00139	257	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	63	131	IPR000504	GO:0003723
	Seca6g00139	257	Pfam	Zinc knuckle	156	171	IPR001878	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g00139	Seca-Chr6	3562725	3563690	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g00139	59	122	Eukaryotic Initiation Factors Gene Family	AT3G11400	40.625	2.01e-09	55.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g00139	K13154		-	psat:127137475	260.766