Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00117 ATGGACTTGAAGTCGAATCACACCCCTGTTCTCACTGATACTGCACCCATAACAAAGTCAAGACTGCATGTGCATTCCAGTTTGTTGCCTTATTCCCATGCCGGGGCAACCTTTCCACATGGTATGTTATTGACTATCCCAAGGAAGAAGACGGGAATTCTTGAAGATGTCCGTTCTAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCACCCAGAAATATAACAAAGGATGTTAGTAATGGATTTGCATCATCTGAAGCTGATACTGCTAGTTCTTATTTCACCTGGCTGCTAAAATATCCATCAGCACTTACATCTTTTGATCAAATTACGAACTATGCAAAAGGCAAAAGAATTGCATTGTTTATGGATTATGATGGAACTCTTTCACCGATTGTGGATAATCCTGACTGTGCCTTCATGTCTGAAAATATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATTAGTGGAAGAAGTCGTGACAAGGTGTATGAATTTGTAGGACTAACAGAACTCTATTATGCTGGTAGTCATGGGATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAACCACCCTAATTGCATCATTAGGTCTGCAGATAAGCAGGGTAAGGAAGTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCCATGATTGATGAGGTACTTAAGTCTCTCATTGAGTGTACCAAAGACATCAAAGGAGCAAAAGTTGAGAACAACAAATTTTGTGTCTCTGTACATTACCGCAATGTAGATGAGAAGAACTGGGATTTGGTGGGGCAGCGTGTTAATGATGTTCTAAAGTGCTATCCACGTTTGAGACTAACTCATGGGCGTAAGGTTTTAGAGGTTCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTGACATTTTTACTTGAGTCACTTGGTAAGTTCATTTTTTGTTTATTTAATATATGGTCACTTTTTTTAAAGATCAGAGTTCTTTGTTTTGCAGTAAATGACATCAGAAAATATTGTTTTTAG 1044 0.3927 MDLKSNHTPVLTDTAPITKSRLHVHSSLLPYSHAGATFPHGMLLTIPRKKTGILEDVRSSGWLDAMKSSSPPPRNITKDVSNGFASSEADTASSYFTWLLKYPSALTSFDQITNYAKGKRIALFMDYDGTLSPIVDNPDCAFMSENMRAAVKKVAEYFPTAIISGRSRDKVYEFVGLTELYYAGSHGMDIIGPVRQSVSDNHPNCIIRSADKQGKEVNLFQPAAEFLPMIDEVLKSLIECTKDIKGAKVENNKFCVSVHYRNVDEKNWDLVGQRVNDVLKCYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGKFIFCLFNIWSLFLKIRVLCFAVNDIRKYCF. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00117 347 NCBIfam HAD-IIB family hydrolase 123 316 IPR006379 -
Seca6g00117 347 FunFam Trehalose 6-phosphate phosphatase 223 299 - -
Seca6g00117 347 SUPERFAMILY HAD-like 122 320 IPR036412 -
Seca6g00117 347 Gene3D - 204 299 - -
Seca6g00117 347 FunFam Trehalose 6-phosphate phosphatase RA3 121 262 - -
Seca6g00117 347 Gene3D - 123 314 IPR023214 -
Seca6g00117 347 Pfam Trehalose-phosphatase 124 321 IPR003337 GO:0003824|GO:0005992
Seca6g00117 347 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 316 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00117 Seca-Chr6 3264970 3269486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00117 115 300 Trehalose Biosynthesis Gene Families AT1G70290 26.425 9.00e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00117 K01087 - gmx:100819495 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00117 6 3264970 3269486 Seca6g00117 6 3264970 3269486 ECH